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Non-merohedral twinning: from minerals to proteins

In contrast to twinning by merohedry, the reciprocal lattices of the different domains of non-merohedral twins do not overlap exactly. This leads to three kinds of reflections: reflections with no overlap, reflections with an exact overlap and reflections with a partial overlap of a reflection from...

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Autores principales: Sevvana, Madhumati, Ruf, Michael, Usón, Isabel, Sheldrick, George M., Herbst-Irmer, Regine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6889912/
https://www.ncbi.nlm.nih.gov/pubmed/31793898
http://dx.doi.org/10.1107/S2059798319010179
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author Sevvana, Madhumati
Ruf, Michael
Usón, Isabel
Sheldrick, George M.
Herbst-Irmer, Regine
author_facet Sevvana, Madhumati
Ruf, Michael
Usón, Isabel
Sheldrick, George M.
Herbst-Irmer, Regine
author_sort Sevvana, Madhumati
collection PubMed
description In contrast to twinning by merohedry, the reciprocal lattices of the different domains of non-merohedral twins do not overlap exactly. This leads to three kinds of reflections: reflections with no overlap, reflections with an exact overlap and reflections with a partial overlap of a reflection from a second domain. This complicates the unit-cell determination, indexing, data integration and scaling of X-ray diffraction data. However, with hindsight it is possible to detwin the data because there are reflections that are not affected by the twinning. In this article, the successful solution and refinement of one mineral, one organometallic and two protein non-merohedral twins using a common strategy are described. The unit-cell constants and the orientation matrices were determined by the program CELL_NOW. The data were then integrated with SAINT. TWINABS was used for scaling, empirical absorption corrections and the generation of two different data files, one with detwinned data for structure solution and refinement and a second one for (usually more accurate) structure refinement against total integrated intensities. The structures were solved by experimental phasing using SHELXT for the first two structures and SHELXC/D/E for the two protein structures; all models were refined with SHELXL.
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spelling pubmed-68899122019-12-16 Non-merohedral twinning: from minerals to proteins Sevvana, Madhumati Ruf, Michael Usón, Isabel Sheldrick, George M. Herbst-Irmer, Regine Acta Crystallogr D Struct Biol Ccp4 In contrast to twinning by merohedry, the reciprocal lattices of the different domains of non-merohedral twins do not overlap exactly. This leads to three kinds of reflections: reflections with no overlap, reflections with an exact overlap and reflections with a partial overlap of a reflection from a second domain. This complicates the unit-cell determination, indexing, data integration and scaling of X-ray diffraction data. However, with hindsight it is possible to detwin the data because there are reflections that are not affected by the twinning. In this article, the successful solution and refinement of one mineral, one organometallic and two protein non-merohedral twins using a common strategy are described. The unit-cell constants and the orientation matrices were determined by the program CELL_NOW. The data were then integrated with SAINT. TWINABS was used for scaling, empirical absorption corrections and the generation of two different data files, one with detwinned data for structure solution and refinement and a second one for (usually more accurate) structure refinement against total integrated intensities. The structures were solved by experimental phasing using SHELXT for the first two structures and SHELXC/D/E for the two protein structures; all models were refined with SHELXL. International Union of Crystallography 2019-11-19 /pmc/articles/PMC6889912/ /pubmed/31793898 http://dx.doi.org/10.1107/S2059798319010179 Text en © Sevvana et al. 2019 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Ccp4
Sevvana, Madhumati
Ruf, Michael
Usón, Isabel
Sheldrick, George M.
Herbst-Irmer, Regine
Non-merohedral twinning: from minerals to proteins
title Non-merohedral twinning: from minerals to proteins
title_full Non-merohedral twinning: from minerals to proteins
title_fullStr Non-merohedral twinning: from minerals to proteins
title_full_unstemmed Non-merohedral twinning: from minerals to proteins
title_short Non-merohedral twinning: from minerals to proteins
title_sort non-merohedral twinning: from minerals to proteins
topic Ccp4
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6889912/
https://www.ncbi.nlm.nih.gov/pubmed/31793898
http://dx.doi.org/10.1107/S2059798319010179
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