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Shake-it-off: a simple ultrasonic cryo-EM specimen-preparation device

Although microscopes and image-analysis software for electron cryomicroscopy (cryo-EM) have improved dramatically in recent years, specimen-preparation methods have lagged behind. Most strategies still rely on blotting microscope grids with paper to produce a thin film of solution suitable for vitri...

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Autores principales: Rubinstein, John L., Guo, Hui, Ripstein, Zev A., Haydaroglu, Ali, Au, Aaron, Yip, Christopher M., Di Trani, Justin M., Benlekbir, Samir, Kwok, Timothy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6889916/
https://www.ncbi.nlm.nih.gov/pubmed/31793900
http://dx.doi.org/10.1107/S2059798319014372
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author Rubinstein, John L.
Guo, Hui
Ripstein, Zev A.
Haydaroglu, Ali
Au, Aaron
Yip, Christopher M.
Di Trani, Justin M.
Benlekbir, Samir
Kwok, Timothy
author_facet Rubinstein, John L.
Guo, Hui
Ripstein, Zev A.
Haydaroglu, Ali
Au, Aaron
Yip, Christopher M.
Di Trani, Justin M.
Benlekbir, Samir
Kwok, Timothy
author_sort Rubinstein, John L.
collection PubMed
description Although microscopes and image-analysis software for electron cryomicroscopy (cryo-EM) have improved dramatically in recent years, specimen-preparation methods have lagged behind. Most strategies still rely on blotting microscope grids with paper to produce a thin film of solution suitable for vitrification. This approach loses more than 99.9% of the applied sample and requires several seconds, leading to problematic air–water interface interactions for macromolecules in the resulting thin film of solution and complicating time-resolved studies. Recently developed self-wicking EM grids allow the use of small volumes of sample, with nanowires on the grid bars removing excess solution to produce a thin film within tens of milliseconds from sample application to freezing. Here, a simple cryo-EM specimen-preparation device that uses components from an ultrasonic humidifier to transfer protein solution onto a self-wicking EM grid is presented. The device is controlled by a Raspberry Pi single-board computer and all components are either widely available or can be manufactured by online services, allowing the device to be constructed in laboratories that specialize in cryo-EM rather than instrument design. The simple open-source design permits the straightforward customization of the instrument for specialized experiments.
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spelling pubmed-68899162019-12-16 Shake-it-off: a simple ultrasonic cryo-EM specimen-preparation device Rubinstein, John L. Guo, Hui Ripstein, Zev A. Haydaroglu, Ali Au, Aaron Yip, Christopher M. Di Trani, Justin M. Benlekbir, Samir Kwok, Timothy Acta Crystallogr D Struct Biol Ccp-EM Although microscopes and image-analysis software for electron cryomicroscopy (cryo-EM) have improved dramatically in recent years, specimen-preparation methods have lagged behind. Most strategies still rely on blotting microscope grids with paper to produce a thin film of solution suitable for vitrification. This approach loses more than 99.9% of the applied sample and requires several seconds, leading to problematic air–water interface interactions for macromolecules in the resulting thin film of solution and complicating time-resolved studies. Recently developed self-wicking EM grids allow the use of small volumes of sample, with nanowires on the grid bars removing excess solution to produce a thin film within tens of milliseconds from sample application to freezing. Here, a simple cryo-EM specimen-preparation device that uses components from an ultrasonic humidifier to transfer protein solution onto a self-wicking EM grid is presented. The device is controlled by a Raspberry Pi single-board computer and all components are either widely available or can be manufactured by online services, allowing the device to be constructed in laboratories that specialize in cryo-EM rather than instrument design. The simple open-source design permits the straightforward customization of the instrument for specialized experiments. International Union of Crystallography 2019-11-22 /pmc/articles/PMC6889916/ /pubmed/31793900 http://dx.doi.org/10.1107/S2059798319014372 Text en © Rubinstein et al. 2019 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Ccp-EM
Rubinstein, John L.
Guo, Hui
Ripstein, Zev A.
Haydaroglu, Ali
Au, Aaron
Yip, Christopher M.
Di Trani, Justin M.
Benlekbir, Samir
Kwok, Timothy
Shake-it-off: a simple ultrasonic cryo-EM specimen-preparation device
title Shake-it-off: a simple ultrasonic cryo-EM specimen-preparation device
title_full Shake-it-off: a simple ultrasonic cryo-EM specimen-preparation device
title_fullStr Shake-it-off: a simple ultrasonic cryo-EM specimen-preparation device
title_full_unstemmed Shake-it-off: a simple ultrasonic cryo-EM specimen-preparation device
title_short Shake-it-off: a simple ultrasonic cryo-EM specimen-preparation device
title_sort shake-it-off: a simple ultrasonic cryo-em specimen-preparation device
topic Ccp-EM
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6889916/
https://www.ncbi.nlm.nih.gov/pubmed/31793900
http://dx.doi.org/10.1107/S2059798319014372
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