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Characterization of a Novel Thermobifida fusca Bacteriophage P318
Thermobifida fusca is of biotechnological interest due to its ability to produce an array of plant cell wall hydrolytic enzymes. Nonetheless, only one T. fusca bacteriophage with genome information has been reported to date. This study was aimed at discovering more relevant bacteriophages to expand...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6893835/ https://www.ncbi.nlm.nih.gov/pubmed/31717440 http://dx.doi.org/10.3390/v11111042 |
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author | Cheepudom, Jatuporn Lin, Tzu-Ling Lee, Cheng-Cheng Meng, Menghsiao |
author_facet | Cheepudom, Jatuporn Lin, Tzu-Ling Lee, Cheng-Cheng Meng, Menghsiao |
author_sort | Cheepudom, Jatuporn |
collection | PubMed |
description | Thermobifida fusca is of biotechnological interest due to its ability to produce an array of plant cell wall hydrolytic enzymes. Nonetheless, only one T. fusca bacteriophage with genome information has been reported to date. This study was aimed at discovering more relevant bacteriophages to expand the existing knowledge of phage diversity for this host species. With this end in view, a thermostable T. fusca bacteriophage P318, which belongs to the Siphoviridae family, was isolated and characterized. P318 has a double-stranded DNA genome of 48,045 base pairs with 3′-extended COS ends, on which 52 putative ORFs are organized into clusters responsible for the order of genome replication, virion morphogenesis, and the regulation of the lytic/lysogenic cycle. In comparison with T. fusca and the previously discovered bacteriophage P1312, P318 has a much lower G+C content in its genome except at the region encompassing ORF42, which produced a protein with unknown function. P1312 and P318 share very few similarities in their genomes except for the regions encompassing ORF42 of P318 and ORF51 of P1312 that are homologous. Thus, acquisition of ORF42 by lateral gene transfer might be an important step in the evolution of P318. |
format | Online Article Text |
id | pubmed-6893835 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-68938352019-12-23 Characterization of a Novel Thermobifida fusca Bacteriophage P318 Cheepudom, Jatuporn Lin, Tzu-Ling Lee, Cheng-Cheng Meng, Menghsiao Viruses Article Thermobifida fusca is of biotechnological interest due to its ability to produce an array of plant cell wall hydrolytic enzymes. Nonetheless, only one T. fusca bacteriophage with genome information has been reported to date. This study was aimed at discovering more relevant bacteriophages to expand the existing knowledge of phage diversity for this host species. With this end in view, a thermostable T. fusca bacteriophage P318, which belongs to the Siphoviridae family, was isolated and characterized. P318 has a double-stranded DNA genome of 48,045 base pairs with 3′-extended COS ends, on which 52 putative ORFs are organized into clusters responsible for the order of genome replication, virion morphogenesis, and the regulation of the lytic/lysogenic cycle. In comparison with T. fusca and the previously discovered bacteriophage P1312, P318 has a much lower G+C content in its genome except at the region encompassing ORF42, which produced a protein with unknown function. P1312 and P318 share very few similarities in their genomes except for the regions encompassing ORF42 of P318 and ORF51 of P1312 that are homologous. Thus, acquisition of ORF42 by lateral gene transfer might be an important step in the evolution of P318. MDPI 2019-11-08 /pmc/articles/PMC6893835/ /pubmed/31717440 http://dx.doi.org/10.3390/v11111042 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Cheepudom, Jatuporn Lin, Tzu-Ling Lee, Cheng-Cheng Meng, Menghsiao Characterization of a Novel Thermobifida fusca Bacteriophage P318 |
title | Characterization of a Novel Thermobifida fusca Bacteriophage P318 |
title_full | Characterization of a Novel Thermobifida fusca Bacteriophage P318 |
title_fullStr | Characterization of a Novel Thermobifida fusca Bacteriophage P318 |
title_full_unstemmed | Characterization of a Novel Thermobifida fusca Bacteriophage P318 |
title_short | Characterization of a Novel Thermobifida fusca Bacteriophage P318 |
title_sort | characterization of a novel thermobifida fusca bacteriophage p318 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6893835/ https://www.ncbi.nlm.nih.gov/pubmed/31717440 http://dx.doi.org/10.3390/v11111042 |
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