Cargando…

CHETAH: a selective, hierarchical cell type identification method for single-cell RNA sequencing

Cell type identification is essential for single-cell RNA sequencing (scRNA-seq) studies, currently transforming the life sciences. CHETAH (CHaracterization of cEll Types Aided by Hierarchical classification) is an accurate cell type identification algorithm that is rapid and selective, including th...

Descripción completa

Detalles Bibliográficos
Autores principales:	de Kanter, Jurrian K, Lijnzaad, Philip, Candelli, Tito, Margaritis, Thanasis, Holstege, Frank C P
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2019
Materias:	Methods Online
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6895264/ https://www.ncbi.nlm.nih.gov/pubmed/31226206 http://dx.doi.org/10.1093/nar/gkz543

Ejemplares similares

Identification and characterization of relapse-initiating cells in MLL-rearranged infant ALL by single-cell transcriptomics
por: Candelli, Tito, et al.
Publicado: (2021)

CellBIC: bimodality-based top-down clustering of single-cell RNA sequencing data reveals hierarchical structure of the cell type
por: Kim, Junil, et al.
Publicado: (2018)

Hierarchical DNA branch assembly-encoded fluorescent nanoladders for single-cell transcripts imaging
por: Cao, Xiaowen, et al.
Publicado: (2022)

A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data
por: Feng, Hao, et al.
Publicado: (2014)

Adaptable gene-specific dye bias correction for two-channel DNA microarrays
por: Margaritis, Thanasis, et al.
Publicado: (2009)

SMARTer single cell total RNA sequencing
por: Verboom, Karen, et al.
Publicado: (2019)

Rapid hierarchical assembly of medium-size DNA cassettes
por: Schmid-Burgk, Jonathan Leo, et al.
Publicado: (2012)

Identification of target-binding peptide motifs by high-throughput sequencing of phage-selected peptides
por: Rentero Rebollo, Inmaculada, et al.
Publicado: (2014)

Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data
por: Klijn, Christiaan, et al.
Publicado: (2008)

Hierarchical chromatin organization detected by TADpole
por: Soler-Vila, Paula, et al.
Publicado: (2020)

Next-generation sequencing-guided identification and reconstruction of antibody CDR combinations from phage selection outputs
por: Barreto, Kris, et al.
Publicado: (2019)

Cell-specific network constructed by single-cell RNA sequencing data
por: Dai, Hao, et al.
Publicado: (2019)

Single-cell atlas of developing murine adrenal gland reveals relation of Schwann cell precursor signature to neuroblastoma phenotype
por: Hanemaaijer, Evelyn S., et al.
Publicado: (2021)

Inferring population structure and relationship using minimal independent evolutionary markers in Y-chromosome: a hybrid approach of recursive feature selection for hierarchical clustering
por: Srivastava, Amit Kumar, et al.
Publicado: (2014)

Prioritizing tests of epistasis through hierarchical representation of genomic redundancies
por: Cowman, Tyler, et al.
Publicado: (2017)

IC-Finder: inferring robustly the hierarchical organization of chromatin folding
por: Haddad, Noelle, et al.
Publicado: (2017)

ASHIC: hierarchical Bayesian modeling of diploid chromatin contacts and structures
por: Ye, Tiantian, et al.
Publicado: (2020)

Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing
por: Lee, Eun-Joon, et al.
Publicado: (2011)

Defining cell populations with single-cell gene expression profiling: correlations and identification of astrocyte subpopulations
por: Ståhlberg, Anders, et al.
Publicado: (2011)

MetClo: methylase-assisted hierarchical DNA assembly using a single type IIS restriction enzyme
por: Lin, Da, et al.
Publicado: (2018)

Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy
por: Marmé, Nicole, et al.
Publicado: (2006)

Experimental mapping of soluble protein domains using a hierarchical approach
por: Pedelacq, Jean-Denis, et al.
Publicado: (2011)

Establishment of single-cell screening system for the rapid identification of transcriptional modulators involved in direct cell reprogramming
por: Shin, Jay W., et al.
Publicado: (2012)

Ab initio gene identification in metagenomic sequences
por: Zhu, Wenhan, et al.
Publicado: (2010)

Cell cycle population effects in perturbation studies
por: O'Duibhir, Eoghan, et al.
Publicado: (2014)

A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level
por: Zheng, Sika, et al.
Publicado: (2009)

Identification of species by multiplex analysis of variable-length sequences
por: Pereira, Filipe, et al.
Publicado: (2010)

Targeted reconstruction of T cell receptor sequence from single cell RNA-seq links CDR3 length to T cell differentiation state
por: Afik, Shaked, et al.
Publicado: (2017)

Identification of soluble protein fragments by gene fragmentation and genetic selection
por: Dyson, Michael R., et al.
Publicado: (2008)

STRIDE: accurately decomposing and integrating spatial transcriptomics using single-cell RNA sequencing
por: Sun, Dongqing, et al.
Publicado: (2022)

MARVEL: an integrated alternative splicing analysis platform for single-cell RNA sequencing data
por: Wen, Wei Xiong, et al.
Publicado: (2023)

A sparse differential clustering algorithm for tracing cell type changes via single-cell RNA-sequencing data
por: Barron, Martin, et al.
Publicado: (2018)

Quantifying selection in high-throughput Immunoglobulin sequencing data sets
por: Yaari, Gur, et al.
Publicado: (2012)

Accurate read-based metagenome characterization using a hierarchical suite of unique signatures
por: Freitas, Tracey Allen K., et al.
Publicado: (2015)

Cluster-independent marker feature identification from single-cell omics data using SEMITONES
por: Vlot, Anna Hendrika Cornelia, et al.
Publicado: (2022)

Selective ablation of 3′ RNA ends and processive RTs facilitate direct cDNA sequencing of full-length host cell and viral transcripts
por: Gallardo, Christian M, et al.
Publicado: (2022)

Selection of restriction endonucleases using artificial cells
por: Zheng, Yu, et al.
Publicado: (2007)

Single-cell genome-wide concurrent haplotyping and copy-number profiling through genotyping-by-sequencing
por: Masset, Heleen, et al.
Publicado: (2022)

Identification and genetic analysis of cancer cells with PCR-activated cell sorting
por: Eastburn, Dennis J., et al.
Publicado: (2014)

BHi-Cect: a top-down algorithm for identifying the multi-scale hierarchical structure of chromosomes
por: Kumar, Vipin, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_mr84mrdt8hpvfjktst2gt4ksmr