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Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-dihydro-1H-1,3-benzodiazol-2-one
In the title molecule, C(11)H(10)N(2)O, the dihydrobenzimidazol-2-one moiety is essentially planar, with the prop-2-yn-1-yl substituent rotated well out of this plane. In the crystal, C—H(Mthy)⋯π(ring) interactions and C—H(Prop)⋯O(Dhyr) (Mthy = methyl, Prop = prop-2-yn-1-yl and Dhyr = dihydro)...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6895944/ https://www.ncbi.nlm.nih.gov/pubmed/31871762 http://dx.doi.org/10.1107/S2056989019015779 |
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author | Saber, Asmaa Srhir, Mohamed Hökelek, Tuncer Mague, Joel T. Hamou Ahabchane, Noureddine Sebbar, Nada Kheira Essassi, El Mokhtar |
author_facet | Saber, Asmaa Srhir, Mohamed Hökelek, Tuncer Mague, Joel T. Hamou Ahabchane, Noureddine Sebbar, Nada Kheira Essassi, El Mokhtar |
author_sort | Saber, Asmaa |
collection | PubMed |
description | In the title molecule, C(11)H(10)N(2)O, the dihydrobenzimidazol-2-one moiety is essentially planar, with the prop-2-yn-1-yl substituent rotated well out of this plane. In the crystal, C—H(Mthy)⋯π(ring) interactions and C—H(Prop)⋯O(Dhyr) (Mthy = methyl, Prop = prop-2-yn-1-yl and Dhyr = dihydro) hydrogen bonds form corrugated layers parallel to (10[Image: see text]), which are associated through additional C—H(Bnz)⋯O(Dhyr) (Bnz = benzene) hydrogen bonds and head-to-tail, slipped, π-stacking [centroid-to-centroid distance = 3.7712 (7) Å] interactions between dihydrobenzimidazol-2-one moieties. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (44.1%), H⋯C/C⋯H (33.5%) and O⋯H/H⋯O (13.4%) interactions. Hydrogen-bonding and van der Waals interactions are the dominant interactions in the crystal packing. Computational chemistry calculations indicate that in the crystal, C—H⋯O hydrogen-bond energies are 46.8 and 32.5 (for C—H(Prop)⋯O(Dhyr)) and 20.2 (for C—H(Bnz)⋯O(Dhyr)) kJ mol(−1). Density functional theory (DFT) optimized structures at the B3LYP/6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. The HOMO–LUMO behaviour was elucidated to determine the energy gap. |
format | Online Article Text |
id | pubmed-6895944 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-68959442019-12-23 Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-dihydro-1H-1,3-benzodiazol-2-one Saber, Asmaa Srhir, Mohamed Hökelek, Tuncer Mague, Joel T. Hamou Ahabchane, Noureddine Sebbar, Nada Kheira Essassi, El Mokhtar Acta Crystallogr E Crystallogr Commun Research Communications In the title molecule, C(11)H(10)N(2)O, the dihydrobenzimidazol-2-one moiety is essentially planar, with the prop-2-yn-1-yl substituent rotated well out of this plane. In the crystal, C—H(Mthy)⋯π(ring) interactions and C—H(Prop)⋯O(Dhyr) (Mthy = methyl, Prop = prop-2-yn-1-yl and Dhyr = dihydro) hydrogen bonds form corrugated layers parallel to (10[Image: see text]), which are associated through additional C—H(Bnz)⋯O(Dhyr) (Bnz = benzene) hydrogen bonds and head-to-tail, slipped, π-stacking [centroid-to-centroid distance = 3.7712 (7) Å] interactions between dihydrobenzimidazol-2-one moieties. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (44.1%), H⋯C/C⋯H (33.5%) and O⋯H/H⋯O (13.4%) interactions. Hydrogen-bonding and van der Waals interactions are the dominant interactions in the crystal packing. Computational chemistry calculations indicate that in the crystal, C—H⋯O hydrogen-bond energies are 46.8 and 32.5 (for C—H(Prop)⋯O(Dhyr)) and 20.2 (for C—H(Bnz)⋯O(Dhyr)) kJ mol(−1). Density functional theory (DFT) optimized structures at the B3LYP/6–311 G(d,p) level are compared with the experimentally determined molecular structure in the solid state. The HOMO–LUMO behaviour was elucidated to determine the energy gap. International Union of Crystallography 2019-11-29 /pmc/articles/PMC6895944/ /pubmed/31871762 http://dx.doi.org/10.1107/S2056989019015779 Text en © Saber et al. 2019 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Communications Saber, Asmaa Srhir, Mohamed Hökelek, Tuncer Mague, Joel T. Hamou Ahabchane, Noureddine Sebbar, Nada Kheira Essassi, El Mokhtar Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-dihydro-1H-1,3-benzodiazol-2-one |
title | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-dihydro-1H-1,3-benzodiazol-2-one |
title_full | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-dihydro-1H-1,3-benzodiazol-2-one |
title_fullStr | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-dihydro-1H-1,3-benzodiazol-2-one |
title_full_unstemmed | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-dihydro-1H-1,3-benzodiazol-2-one |
title_short | Crystal structure, Hirshfeld surface analysis and interaction energy and DFT studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-dihydro-1H-1,3-benzodiazol-2-one |
title_sort | crystal structure, hirshfeld surface analysis and interaction energy and dft studies of 1-methyl-3-(prop-2-yn-1-yl)-2,3-dihydro-1h-1,3-benzodiazol-2-one |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6895944/ https://www.ncbi.nlm.nih.gov/pubmed/31871762 http://dx.doi.org/10.1107/S2056989019015779 |
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