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LONGITUDINAL MOLECULAR TRAJECTORIES OF DIFFUSE GLIOMA IN ADULTS

The evolutionary processes that drive universal therapeutic resistance in adult patients with diffuse glioma remain unclear(1,2). Here, we analyzed temporally separated DNA sequencing data and matched clinical annotation from 222 patients with glioma. Through mutational and copy number analyses acro...

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Autores principales: Barthel, Floris P., Johnson, Kevin C., Varn, Frederick S., Moskalik, Anzhela D., Tanner, Georgette, Kocakavuk, Emre, Anderson, Kevin J., Abiola, Olajide, Aldape, Kenneth, Alfaro, Kristin D., Alpar, Donat, Amin, Samirkumar B., Ashley, David M., Bandopadhayay, Pratiti, Barnholtz-Sloan, Jill S., Beroukhim, Rameen, Bock, Christoph, Brastianos, Priscilla K., Brat, Daniel J., Brodbelt, Andrew R., Bruns, Alexander F., Bulsara, Ketan R., Chakrabarty, Aruna, Chakravarti, Arnab, Chuang, Jeffrey H., Claus, Elizabeth B., Cochran, Elizabeth J., Connelly, Jennifer, Costello, Joseph F., Finocchiaro, Gaetano, Fletcher, Michael N., French, Pim J., Gan, Hui K., Gilbert, Mark R., Gould, Peter V., Grimmer, Matthew R., Iavarone, Antonio, Ismail, Azzam, Jenkinson, Michael D., Khasraw, Mustafa, Kim, Hoon, Kouwenhoven, Mathilde C.M., LaViolette, Peter S., Li, Meihong, Lichter, Peter, Ligon, Keith L., Lowman, Allison K., Malta, Tathiane M., Mazor, Tali, McDonald, Kerrie L., Molinaro, Annette M., Nam, Do-Hyun, Nayyar, Naema, Ng, Ho Keung, Ngan, Chew Yee, Niclou, Simone, P., Niers, Johanna M., Noushmehr, Houtan, Noorbakhsh, Javad, Ormond, D. Ryan, Park, Chul-Kee, Poisson, Laila M., Rabadan, Raul, Radlwimmer, Bernhard, Rao, Ganesh, Reifenberger, Guido, Sa, Jason K., Schuster, Michael, Shaw, Brian L., Short, Susan C., Sillevis Smitt, Peter A., Sloan, Andrew E., Smits, Marion, Suzuki, Hiromichi, Tabatabai, Ghazaleh, Van Meir, Erwin G., Watts, Colin, Weller, Michael, Wesseling, Pieter, Westerman, Bart A., Widhalm, Georg, Woehrer, Adelheid, Alfred Yung, W.K., Zadeh, Gelareh, Huse, Jason T., de Groot, John F., Stead, Lucy F., Verhaak, Roel G.W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6897368/
https://www.ncbi.nlm.nih.gov/pubmed/31748746
http://dx.doi.org/10.1038/s41586-019-1775-1
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author Barthel, Floris P.
Johnson, Kevin C.
Varn, Frederick S.
Moskalik, Anzhela D.
Tanner, Georgette
Kocakavuk, Emre
Anderson, Kevin J.
Abiola, Olajide
Aldape, Kenneth
Alfaro, Kristin D.
Alpar, Donat
Amin, Samirkumar B.
Ashley, David M.
Bandopadhayay, Pratiti
Barnholtz-Sloan, Jill S.
Beroukhim, Rameen
Bock, Christoph
Brastianos, Priscilla K.
Brat, Daniel J.
Brodbelt, Andrew R.
Bruns, Alexander F.
Bulsara, Ketan R.
Chakrabarty, Aruna
Chakravarti, Arnab
Chuang, Jeffrey H.
Claus, Elizabeth B.
Cochran, Elizabeth J.
Connelly, Jennifer
Costello, Joseph F.
Finocchiaro, Gaetano
Fletcher, Michael N.
French, Pim J.
Gan, Hui K.
Gilbert, Mark R.
Gould, Peter V.
Grimmer, Matthew R.
Iavarone, Antonio
Ismail, Azzam
Jenkinson, Michael D.
Khasraw, Mustafa
Kim, Hoon
Kouwenhoven, Mathilde C.M.
LaViolette, Peter S.
Li, Meihong
Lichter, Peter
Ligon, Keith L.
Lowman, Allison K.
Malta, Tathiane M.
Mazor, Tali
McDonald, Kerrie L.
Molinaro, Annette M.
Nam, Do-Hyun
Nayyar, Naema
Ng, Ho Keung
Ngan, Chew Yee
Niclou, Simone, P.
Niers, Johanna M.
Noushmehr, Houtan
Noorbakhsh, Javad
Ormond, D. Ryan
Park, Chul-Kee
Poisson, Laila M.
Rabadan, Raul
Radlwimmer, Bernhard
Rao, Ganesh
Reifenberger, Guido
Sa, Jason K.
Schuster, Michael
Shaw, Brian L.
Short, Susan C.
Sillevis Smitt, Peter A.
Sloan, Andrew E.
Smits, Marion
Suzuki, Hiromichi
Tabatabai, Ghazaleh
Van Meir, Erwin G.
Watts, Colin
Weller, Michael
Wesseling, Pieter
Westerman, Bart A.
Widhalm, Georg
Woehrer, Adelheid
Alfred Yung, W.K.
Zadeh, Gelareh
Huse, Jason T.
de Groot, John F.
Stead, Lucy F.
Verhaak, Roel G.W.
author_facet Barthel, Floris P.
Johnson, Kevin C.
Varn, Frederick S.
Moskalik, Anzhela D.
Tanner, Georgette
Kocakavuk, Emre
Anderson, Kevin J.
Abiola, Olajide
Aldape, Kenneth
Alfaro, Kristin D.
Alpar, Donat
Amin, Samirkumar B.
Ashley, David M.
Bandopadhayay, Pratiti
Barnholtz-Sloan, Jill S.
Beroukhim, Rameen
Bock, Christoph
Brastianos, Priscilla K.
Brat, Daniel J.
Brodbelt, Andrew R.
Bruns, Alexander F.
Bulsara, Ketan R.
Chakrabarty, Aruna
Chakravarti, Arnab
Chuang, Jeffrey H.
Claus, Elizabeth B.
Cochran, Elizabeth J.
Connelly, Jennifer
Costello, Joseph F.
Finocchiaro, Gaetano
Fletcher, Michael N.
French, Pim J.
Gan, Hui K.
Gilbert, Mark R.
Gould, Peter V.
Grimmer, Matthew R.
Iavarone, Antonio
Ismail, Azzam
Jenkinson, Michael D.
Khasraw, Mustafa
Kim, Hoon
Kouwenhoven, Mathilde C.M.
LaViolette, Peter S.
Li, Meihong
Lichter, Peter
Ligon, Keith L.
Lowman, Allison K.
Malta, Tathiane M.
Mazor, Tali
McDonald, Kerrie L.
Molinaro, Annette M.
Nam, Do-Hyun
Nayyar, Naema
Ng, Ho Keung
Ngan, Chew Yee
Niclou, Simone, P.
Niers, Johanna M.
Noushmehr, Houtan
Noorbakhsh, Javad
Ormond, D. Ryan
Park, Chul-Kee
Poisson, Laila M.
Rabadan, Raul
Radlwimmer, Bernhard
Rao, Ganesh
Reifenberger, Guido
Sa, Jason K.
Schuster, Michael
Shaw, Brian L.
Short, Susan C.
Sillevis Smitt, Peter A.
Sloan, Andrew E.
Smits, Marion
Suzuki, Hiromichi
Tabatabai, Ghazaleh
Van Meir, Erwin G.
Watts, Colin
Weller, Michael
Wesseling, Pieter
Westerman, Bart A.
Widhalm, Georg
Woehrer, Adelheid
Alfred Yung, W.K.
Zadeh, Gelareh
Huse, Jason T.
de Groot, John F.
Stead, Lucy F.
Verhaak, Roel G.W.
collection PubMed
description The evolutionary processes that drive universal therapeutic resistance in adult patients with diffuse glioma remain unclear(1,2). Here, we analyzed temporally separated DNA sequencing data and matched clinical annotation from 222 patients with glioma. Through mutational and copy number analyses across the three major subtypes of diffuse glioma, we observed that driver genes detected at initial disease were retained at recurrence, while there was little evidence of recurrence-specific gene alterations. Treatment with alkylating-agents resulted in a hypermutator phenotype at different rates across glioma subtypes, and hypermutation was not associated with differences in survival. Acquired aneuploidy was frequently detected in recurrent gliomas characterized by presence of an IDH mutation but without 1p/19q codeletion and further converged with acquired cell cycle alterations and poor outcomes. We show that the clonal architecture of each tumor remains similar over time and that absence of clonal selection was associated with increased survival. Finally, we did not observe differences in immunoediting levels between initial and recurrent glioma. Our results collectively argue that the strongest selective pressures occur early during glioma development and that current therapies shape this evolution in a largely stochastic manner.
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spelling pubmed-68973682020-05-20 LONGITUDINAL MOLECULAR TRAJECTORIES OF DIFFUSE GLIOMA IN ADULTS Barthel, Floris P. Johnson, Kevin C. Varn, Frederick S. Moskalik, Anzhela D. Tanner, Georgette Kocakavuk, Emre Anderson, Kevin J. Abiola, Olajide Aldape, Kenneth Alfaro, Kristin D. Alpar, Donat Amin, Samirkumar B. Ashley, David M. Bandopadhayay, Pratiti Barnholtz-Sloan, Jill S. Beroukhim, Rameen Bock, Christoph Brastianos, Priscilla K. Brat, Daniel J. Brodbelt, Andrew R. Bruns, Alexander F. Bulsara, Ketan R. Chakrabarty, Aruna Chakravarti, Arnab Chuang, Jeffrey H. Claus, Elizabeth B. Cochran, Elizabeth J. Connelly, Jennifer Costello, Joseph F. Finocchiaro, Gaetano Fletcher, Michael N. French, Pim J. Gan, Hui K. Gilbert, Mark R. Gould, Peter V. Grimmer, Matthew R. Iavarone, Antonio Ismail, Azzam Jenkinson, Michael D. Khasraw, Mustafa Kim, Hoon Kouwenhoven, Mathilde C.M. LaViolette, Peter S. Li, Meihong Lichter, Peter Ligon, Keith L. Lowman, Allison K. Malta, Tathiane M. Mazor, Tali McDonald, Kerrie L. Molinaro, Annette M. Nam, Do-Hyun Nayyar, Naema Ng, Ho Keung Ngan, Chew Yee Niclou, Simone, P. Niers, Johanna M. Noushmehr, Houtan Noorbakhsh, Javad Ormond, D. Ryan Park, Chul-Kee Poisson, Laila M. Rabadan, Raul Radlwimmer, Bernhard Rao, Ganesh Reifenberger, Guido Sa, Jason K. Schuster, Michael Shaw, Brian L. Short, Susan C. Sillevis Smitt, Peter A. Sloan, Andrew E. Smits, Marion Suzuki, Hiromichi Tabatabai, Ghazaleh Van Meir, Erwin G. Watts, Colin Weller, Michael Wesseling, Pieter Westerman, Bart A. Widhalm, Georg Woehrer, Adelheid Alfred Yung, W.K. Zadeh, Gelareh Huse, Jason T. de Groot, John F. Stead, Lucy F. Verhaak, Roel G.W. Nature Article The evolutionary processes that drive universal therapeutic resistance in adult patients with diffuse glioma remain unclear(1,2). Here, we analyzed temporally separated DNA sequencing data and matched clinical annotation from 222 patients with glioma. Through mutational and copy number analyses across the three major subtypes of diffuse glioma, we observed that driver genes detected at initial disease were retained at recurrence, while there was little evidence of recurrence-specific gene alterations. Treatment with alkylating-agents resulted in a hypermutator phenotype at different rates across glioma subtypes, and hypermutation was not associated with differences in survival. Acquired aneuploidy was frequently detected in recurrent gliomas characterized by presence of an IDH mutation but without 1p/19q codeletion and further converged with acquired cell cycle alterations and poor outcomes. We show that the clonal architecture of each tumor remains similar over time and that absence of clonal selection was associated with increased survival. Finally, we did not observe differences in immunoediting levels between initial and recurrent glioma. Our results collectively argue that the strongest selective pressures occur early during glioma development and that current therapies shape this evolution in a largely stochastic manner. 2019-11-20 2019-12 /pmc/articles/PMC6897368/ /pubmed/31748746 http://dx.doi.org/10.1038/s41586-019-1775-1 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Barthel, Floris P.
Johnson, Kevin C.
Varn, Frederick S.
Moskalik, Anzhela D.
Tanner, Georgette
Kocakavuk, Emre
Anderson, Kevin J.
Abiola, Olajide
Aldape, Kenneth
Alfaro, Kristin D.
Alpar, Donat
Amin, Samirkumar B.
Ashley, David M.
Bandopadhayay, Pratiti
Barnholtz-Sloan, Jill S.
Beroukhim, Rameen
Bock, Christoph
Brastianos, Priscilla K.
Brat, Daniel J.
Brodbelt, Andrew R.
Bruns, Alexander F.
Bulsara, Ketan R.
Chakrabarty, Aruna
Chakravarti, Arnab
Chuang, Jeffrey H.
Claus, Elizabeth B.
Cochran, Elizabeth J.
Connelly, Jennifer
Costello, Joseph F.
Finocchiaro, Gaetano
Fletcher, Michael N.
French, Pim J.
Gan, Hui K.
Gilbert, Mark R.
Gould, Peter V.
Grimmer, Matthew R.
Iavarone, Antonio
Ismail, Azzam
Jenkinson, Michael D.
Khasraw, Mustafa
Kim, Hoon
Kouwenhoven, Mathilde C.M.
LaViolette, Peter S.
Li, Meihong
Lichter, Peter
Ligon, Keith L.
Lowman, Allison K.
Malta, Tathiane M.
Mazor, Tali
McDonald, Kerrie L.
Molinaro, Annette M.
Nam, Do-Hyun
Nayyar, Naema
Ng, Ho Keung
Ngan, Chew Yee
Niclou, Simone, P.
Niers, Johanna M.
Noushmehr, Houtan
Noorbakhsh, Javad
Ormond, D. Ryan
Park, Chul-Kee
Poisson, Laila M.
Rabadan, Raul
Radlwimmer, Bernhard
Rao, Ganesh
Reifenberger, Guido
Sa, Jason K.
Schuster, Michael
Shaw, Brian L.
Short, Susan C.
Sillevis Smitt, Peter A.
Sloan, Andrew E.
Smits, Marion
Suzuki, Hiromichi
Tabatabai, Ghazaleh
Van Meir, Erwin G.
Watts, Colin
Weller, Michael
Wesseling, Pieter
Westerman, Bart A.
Widhalm, Georg
Woehrer, Adelheid
Alfred Yung, W.K.
Zadeh, Gelareh
Huse, Jason T.
de Groot, John F.
Stead, Lucy F.
Verhaak, Roel G.W.
LONGITUDINAL MOLECULAR TRAJECTORIES OF DIFFUSE GLIOMA IN ADULTS
title LONGITUDINAL MOLECULAR TRAJECTORIES OF DIFFUSE GLIOMA IN ADULTS
title_full LONGITUDINAL MOLECULAR TRAJECTORIES OF DIFFUSE GLIOMA IN ADULTS
title_fullStr LONGITUDINAL MOLECULAR TRAJECTORIES OF DIFFUSE GLIOMA IN ADULTS
title_full_unstemmed LONGITUDINAL MOLECULAR TRAJECTORIES OF DIFFUSE GLIOMA IN ADULTS
title_short LONGITUDINAL MOLECULAR TRAJECTORIES OF DIFFUSE GLIOMA IN ADULTS
title_sort longitudinal molecular trajectories of diffuse glioma in adults
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6897368/
https://www.ncbi.nlm.nih.gov/pubmed/31748746
http://dx.doi.org/10.1038/s41586-019-1775-1
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