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Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.

Seasonal influenza results in substantial annual morbidity and mortality in the United States and worldwide. Accurate forecasts of key features of influenza epidemics, such as the timing and severity of the peak incidence in a given season, can inform public health response to outbreaks. As part of...

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Autores principales: Reich, Nicholas G., McGowan, Craig J., Yamana, Teresa K., Tushar, Abhinav, Ray, Evan L., Osthus, Dave, Kandula, Sasikiran, Brooks, Logan C., Crawford-Crudell, Willow, Gibson, Graham Casey, Moore, Evan, Silva, Rebecca, Biggerstaff, Matthew, Johansson, Michael A., Rosenfeld, Roni, Shaman, Jeffrey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6897420/
https://www.ncbi.nlm.nih.gov/pubmed/31756193
http://dx.doi.org/10.1371/journal.pcbi.1007486
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author Reich, Nicholas G.
McGowan, Craig J.
Yamana, Teresa K.
Tushar, Abhinav
Ray, Evan L.
Osthus, Dave
Kandula, Sasikiran
Brooks, Logan C.
Crawford-Crudell, Willow
Gibson, Graham Casey
Moore, Evan
Silva, Rebecca
Biggerstaff, Matthew
Johansson, Michael A.
Rosenfeld, Roni
Shaman, Jeffrey
author_facet Reich, Nicholas G.
McGowan, Craig J.
Yamana, Teresa K.
Tushar, Abhinav
Ray, Evan L.
Osthus, Dave
Kandula, Sasikiran
Brooks, Logan C.
Crawford-Crudell, Willow
Gibson, Graham Casey
Moore, Evan
Silva, Rebecca
Biggerstaff, Matthew
Johansson, Michael A.
Rosenfeld, Roni
Shaman, Jeffrey
author_sort Reich, Nicholas G.
collection PubMed
description Seasonal influenza results in substantial annual morbidity and mortality in the United States and worldwide. Accurate forecasts of key features of influenza epidemics, such as the timing and severity of the peak incidence in a given season, can inform public health response to outbreaks. As part of ongoing efforts to incorporate data and advanced analytical methods into public health decision-making, the United States Centers for Disease Control and Prevention (CDC) has organized seasonal influenza forecasting challenges since the 2013/2014 season. In the 2017/2018 season, 22 teams participated. A subset of four teams created a research consortium called the FluSight Network in early 2017. During the 2017/2018 season they worked together to produce a collaborative multi-model ensemble that combined 21 separate component models into a single model using a machine learning technique called stacking. This approach creates a weighted average of predictive densities where the weight for each component is determined by maximizing overall ensemble accuracy over past seasons. In the 2017/2018 influenza season, one of the largest seasonal outbreaks in the last 15 years, this multi-model ensemble performed better on average than all individual component models and placed second overall in the CDC challenge. It also outperformed the baseline multi-model ensemble created by the CDC that took a simple average of all models submitted to the forecasting challenge. This project shows that collaborative efforts between research teams to develop ensemble forecasting approaches can bring measurable improvements in forecast accuracy and important reductions in the variability of performance from year to year. Efforts such as this, that emphasize real-time testing and evaluation of forecasting models and facilitate the close collaboration between public health officials and modeling researchers, are essential to improving our understanding of how best to use forecasts to improve public health response to seasonal and emerging epidemic threats.
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spelling pubmed-68974202019-12-13 Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S. Reich, Nicholas G. McGowan, Craig J. Yamana, Teresa K. Tushar, Abhinav Ray, Evan L. Osthus, Dave Kandula, Sasikiran Brooks, Logan C. Crawford-Crudell, Willow Gibson, Graham Casey Moore, Evan Silva, Rebecca Biggerstaff, Matthew Johansson, Michael A. Rosenfeld, Roni Shaman, Jeffrey PLoS Comput Biol Research Article Seasonal influenza results in substantial annual morbidity and mortality in the United States and worldwide. Accurate forecasts of key features of influenza epidemics, such as the timing and severity of the peak incidence in a given season, can inform public health response to outbreaks. As part of ongoing efforts to incorporate data and advanced analytical methods into public health decision-making, the United States Centers for Disease Control and Prevention (CDC) has organized seasonal influenza forecasting challenges since the 2013/2014 season. In the 2017/2018 season, 22 teams participated. A subset of four teams created a research consortium called the FluSight Network in early 2017. During the 2017/2018 season they worked together to produce a collaborative multi-model ensemble that combined 21 separate component models into a single model using a machine learning technique called stacking. This approach creates a weighted average of predictive densities where the weight for each component is determined by maximizing overall ensemble accuracy over past seasons. In the 2017/2018 influenza season, one of the largest seasonal outbreaks in the last 15 years, this multi-model ensemble performed better on average than all individual component models and placed second overall in the CDC challenge. It also outperformed the baseline multi-model ensemble created by the CDC that took a simple average of all models submitted to the forecasting challenge. This project shows that collaborative efforts between research teams to develop ensemble forecasting approaches can bring measurable improvements in forecast accuracy and important reductions in the variability of performance from year to year. Efforts such as this, that emphasize real-time testing and evaluation of forecasting models and facilitate the close collaboration between public health officials and modeling researchers, are essential to improving our understanding of how best to use forecasts to improve public health response to seasonal and emerging epidemic threats. Public Library of Science 2019-11-22 /pmc/articles/PMC6897420/ /pubmed/31756193 http://dx.doi.org/10.1371/journal.pcbi.1007486 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Research Article
Reich, Nicholas G.
McGowan, Craig J.
Yamana, Teresa K.
Tushar, Abhinav
Ray, Evan L.
Osthus, Dave
Kandula, Sasikiran
Brooks, Logan C.
Crawford-Crudell, Willow
Gibson, Graham Casey
Moore, Evan
Silva, Rebecca
Biggerstaff, Matthew
Johansson, Michael A.
Rosenfeld, Roni
Shaman, Jeffrey
Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.
title Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.
title_full Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.
title_fullStr Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.
title_full_unstemmed Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.
title_short Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.
title_sort accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the u.s.
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6897420/
https://www.ncbi.nlm.nih.gov/pubmed/31756193
http://dx.doi.org/10.1371/journal.pcbi.1007486
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