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tealeaves: an R package for modelling leaf temperature using energy budgets
Plants must regulate leaf temperature to optimize photosynthesis, control water loss and prevent damage caused by overheating or freezing. Physical models of leaf energy budgets calculate the energy fluxes and leaf temperatures for a given set leaf and environmental parameters. These models can prov...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Oxford University Press
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6899345/ https://www.ncbi.nlm.nih.gov/pubmed/31844509 http://dx.doi.org/10.1093/aobpla/plz054 |
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author | Muir, Christopher D |
author_facet | Muir, Christopher D |
author_sort | Muir, Christopher D |
collection | PubMed |
description | Plants must regulate leaf temperature to optimize photosynthesis, control water loss and prevent damage caused by overheating or freezing. Physical models of leaf energy budgets calculate the energy fluxes and leaf temperatures for a given set leaf and environmental parameters. These models can provide deep insight into the variation in leaf form and function, but there are few computational tools available to use these models. Here I introduce a new R package called tealeaves to make complex leaf energy budget models accessible to a broader array of plant scientists. This package enables novice users to start modelling leaf energy budgets quickly while allowing experts to customize their parameter settings. The code is open source, freely available and readily integrates with other R tools for scientific computing. This paper describes the current functionality of tealeaves, but new features will be added in future releases. This software tool will advance new research on leaf thermal physiology to advance our understanding of basic and applied plant science. |
format | Online Article Text |
id | pubmed-6899345 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-68993452019-12-16 tealeaves: an R package for modelling leaf temperature using energy budgets Muir, Christopher D AoB Plants Tools Plants must regulate leaf temperature to optimize photosynthesis, control water loss and prevent damage caused by overheating or freezing. Physical models of leaf energy budgets calculate the energy fluxes and leaf temperatures for a given set leaf and environmental parameters. These models can provide deep insight into the variation in leaf form and function, but there are few computational tools available to use these models. Here I introduce a new R package called tealeaves to make complex leaf energy budget models accessible to a broader array of plant scientists. This package enables novice users to start modelling leaf energy budgets quickly while allowing experts to customize their parameter settings. The code is open source, freely available and readily integrates with other R tools for scientific computing. This paper describes the current functionality of tealeaves, but new features will be added in future releases. This software tool will advance new research on leaf thermal physiology to advance our understanding of basic and applied plant science. Oxford University Press 2019-12-08 /pmc/articles/PMC6899345/ /pubmed/31844509 http://dx.doi.org/10.1093/aobpla/plz054 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of the Annals of Botany Company. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Tools Muir, Christopher D tealeaves: an R package for modelling leaf temperature using energy budgets |
title | tealeaves: an R package for modelling leaf temperature using energy budgets |
title_full | tealeaves: an R package for modelling leaf temperature using energy budgets |
title_fullStr | tealeaves: an R package for modelling leaf temperature using energy budgets |
title_full_unstemmed | tealeaves: an R package for modelling leaf temperature using energy budgets |
title_short | tealeaves: an R package for modelling leaf temperature using energy budgets |
title_sort | tealeaves: an r package for modelling leaf temperature using energy budgets |
topic | Tools |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6899345/ https://www.ncbi.nlm.nih.gov/pubmed/31844509 http://dx.doi.org/10.1093/aobpla/plz054 |
work_keys_str_mv | AT muirchristopherd tealeavesanrpackageformodellingleaftemperatureusingenergybudgets |