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LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies
Hemoglobinopathies are the most common monogenic disorders worldwide. Substantial effort has been made to establish databases to record complete mutation spectra causing or modifying this group of diseases. We present a variant database which couples an online auxiliary diagnosis and at‐risk assessm...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6899610/ https://www.ncbi.nlm.nih.gov/pubmed/31286593 http://dx.doi.org/10.1002/humu.23863 |
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author | Zhang, Li Zhang, Qianqian Tang, Yaohua Cong, Peikuan Ye, Yuhua Chen, Shiping Zhang, Xinhua Chen, Yan Zhu, Baosheng Cai, Wangwei Chen, Shaoke Cai, Ren Guo, Xiaoling Zhang, Chonglin Zhou, Yuqiu Zou, Jie Liu, Yanhui Chen, Biyan Yan, Shanhuo Chen, Yajun Zhou, Yuehong Ding, Hongmei Li, Xiarong Chen, Dianyu Zhong, Jianmei Shang, Xuan Liu, Xuanzhu Qi, Ming Xu, Xiangmin |
author_facet | Zhang, Li Zhang, Qianqian Tang, Yaohua Cong, Peikuan Ye, Yuhua Chen, Shiping Zhang, Xinhua Chen, Yan Zhu, Baosheng Cai, Wangwei Chen, Shaoke Cai, Ren Guo, Xiaoling Zhang, Chonglin Zhou, Yuqiu Zou, Jie Liu, Yanhui Chen, Biyan Yan, Shanhuo Chen, Yajun Zhou, Yuehong Ding, Hongmei Li, Xiarong Chen, Dianyu Zhong, Jianmei Shang, Xuan Liu, Xuanzhu Qi, Ming Xu, Xiangmin |
author_sort | Zhang, Li |
collection | PubMed |
description | Hemoglobinopathies are the most common monogenic disorders worldwide. Substantial effort has been made to establish databases to record complete mutation spectra causing or modifying this group of diseases. We present a variant database which couples an online auxiliary diagnosis and at‐risk assessment system for hemoglobinopathies (DASH). The database was integrated into the Leiden Open Variation Database (LOVD), in which we included all reported variants focusing on a Chinese population by literature peer review‐curation and existing databases, such as HbVar and IthaGenes. In addition, comprehensive mutation data generated by high‐throughput sequencing of 2,087 hemoglobinopathy patients and 20,222 general individuals from southern China were also incorporated into the database. These sequencing data enabled us to observe disease‐causing and modifier variants responsible for hemoglobinopathies in bulk. Currently, 371 unique variants have been recorded; 265 of 371 were described as disease‐causing variants, whereas 106 were defined as modifier variants, including 34 functional variants identified by a quantitative trait association study of this high‐throughput sequencing data. Due to the availability of a comprehensive phenotype‐genotype data set, DASH has been established to automatically provide accurate suggestions on diagnosis and genetic counseling of hemoglobinopathies. LOVD‐DASH will inspire us to deal with clinical genotyping and molecular screening for other Mendelian disorders. |
format | Online Article Text |
id | pubmed-6899610 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-68996102019-12-19 LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies Zhang, Li Zhang, Qianqian Tang, Yaohua Cong, Peikuan Ye, Yuhua Chen, Shiping Zhang, Xinhua Chen, Yan Zhu, Baosheng Cai, Wangwei Chen, Shaoke Cai, Ren Guo, Xiaoling Zhang, Chonglin Zhou, Yuqiu Zou, Jie Liu, Yanhui Chen, Biyan Yan, Shanhuo Chen, Yajun Zhou, Yuehong Ding, Hongmei Li, Xiarong Chen, Dianyu Zhong, Jianmei Shang, Xuan Liu, Xuanzhu Qi, Ming Xu, Xiangmin Hum Mutat Databases Hemoglobinopathies are the most common monogenic disorders worldwide. Substantial effort has been made to establish databases to record complete mutation spectra causing or modifying this group of diseases. We present a variant database which couples an online auxiliary diagnosis and at‐risk assessment system for hemoglobinopathies (DASH). The database was integrated into the Leiden Open Variation Database (LOVD), in which we included all reported variants focusing on a Chinese population by literature peer review‐curation and existing databases, such as HbVar and IthaGenes. In addition, comprehensive mutation data generated by high‐throughput sequencing of 2,087 hemoglobinopathy patients and 20,222 general individuals from southern China were also incorporated into the database. These sequencing data enabled us to observe disease‐causing and modifier variants responsible for hemoglobinopathies in bulk. Currently, 371 unique variants have been recorded; 265 of 371 were described as disease‐causing variants, whereas 106 were defined as modifier variants, including 34 functional variants identified by a quantitative trait association study of this high‐throughput sequencing data. Due to the availability of a comprehensive phenotype‐genotype data set, DASH has been established to automatically provide accurate suggestions on diagnosis and genetic counseling of hemoglobinopathies. LOVD‐DASH will inspire us to deal with clinical genotyping and molecular screening for other Mendelian disorders. John Wiley and Sons Inc. 2019-09-11 2019-12 /pmc/articles/PMC6899610/ /pubmed/31286593 http://dx.doi.org/10.1002/humu.23863 Text en © 2019 The Authors. Human Mutation Published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Databases Zhang, Li Zhang, Qianqian Tang, Yaohua Cong, Peikuan Ye, Yuhua Chen, Shiping Zhang, Xinhua Chen, Yan Zhu, Baosheng Cai, Wangwei Chen, Shaoke Cai, Ren Guo, Xiaoling Zhang, Chonglin Zhou, Yuqiu Zou, Jie Liu, Yanhui Chen, Biyan Yan, Shanhuo Chen, Yajun Zhou, Yuehong Ding, Hongmei Li, Xiarong Chen, Dianyu Zhong, Jianmei Shang, Xuan Liu, Xuanzhu Qi, Ming Xu, Xiangmin LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies |
title | LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies |
title_full | LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies |
title_fullStr | LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies |
title_full_unstemmed | LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies |
title_short | LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies |
title_sort | lovd–dash: a comprehensive lovd database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies |
topic | Databases |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6899610/ https://www.ncbi.nlm.nih.gov/pubmed/31286593 http://dx.doi.org/10.1002/humu.23863 |
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