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LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies

Hemoglobinopathies are the most common monogenic disorders worldwide. Substantial effort has been made to establish databases to record complete mutation spectra causing or modifying this group of diseases. We present a variant database which couples an online auxiliary diagnosis and at‐risk assessm...

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Autores principales: Zhang, Li, Zhang, Qianqian, Tang, Yaohua, Cong, Peikuan, Ye, Yuhua, Chen, Shiping, Zhang, Xinhua, Chen, Yan, Zhu, Baosheng, Cai, Wangwei, Chen, Shaoke, Cai, Ren, Guo, Xiaoling, Zhang, Chonglin, Zhou, Yuqiu, Zou, Jie, Liu, Yanhui, Chen, Biyan, Yan, Shanhuo, Chen, Yajun, Zhou, Yuehong, Ding, Hongmei, Li, Xiarong, Chen, Dianyu, Zhong, Jianmei, Shang, Xuan, Liu, Xuanzhu, Qi, Ming, Xu, Xiangmin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6899610/
https://www.ncbi.nlm.nih.gov/pubmed/31286593
http://dx.doi.org/10.1002/humu.23863
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author Zhang, Li
Zhang, Qianqian
Tang, Yaohua
Cong, Peikuan
Ye, Yuhua
Chen, Shiping
Zhang, Xinhua
Chen, Yan
Zhu, Baosheng
Cai, Wangwei
Chen, Shaoke
Cai, Ren
Guo, Xiaoling
Zhang, Chonglin
Zhou, Yuqiu
Zou, Jie
Liu, Yanhui
Chen, Biyan
Yan, Shanhuo
Chen, Yajun
Zhou, Yuehong
Ding, Hongmei
Li, Xiarong
Chen, Dianyu
Zhong, Jianmei
Shang, Xuan
Liu, Xuanzhu
Qi, Ming
Xu, Xiangmin
author_facet Zhang, Li
Zhang, Qianqian
Tang, Yaohua
Cong, Peikuan
Ye, Yuhua
Chen, Shiping
Zhang, Xinhua
Chen, Yan
Zhu, Baosheng
Cai, Wangwei
Chen, Shaoke
Cai, Ren
Guo, Xiaoling
Zhang, Chonglin
Zhou, Yuqiu
Zou, Jie
Liu, Yanhui
Chen, Biyan
Yan, Shanhuo
Chen, Yajun
Zhou, Yuehong
Ding, Hongmei
Li, Xiarong
Chen, Dianyu
Zhong, Jianmei
Shang, Xuan
Liu, Xuanzhu
Qi, Ming
Xu, Xiangmin
author_sort Zhang, Li
collection PubMed
description Hemoglobinopathies are the most common monogenic disorders worldwide. Substantial effort has been made to establish databases to record complete mutation spectra causing or modifying this group of diseases. We present a variant database which couples an online auxiliary diagnosis and at‐risk assessment system for hemoglobinopathies (DASH). The database was integrated into the Leiden Open Variation Database (LOVD), in which we included all reported variants focusing on a Chinese population by literature peer review‐curation and existing databases, such as HbVar and IthaGenes. In addition, comprehensive mutation data generated by high‐throughput sequencing of 2,087 hemoglobinopathy patients and 20,222 general individuals from southern China were also incorporated into the database. These sequencing data enabled us to observe disease‐causing and modifier variants responsible for hemoglobinopathies in bulk. Currently, 371 unique variants have been recorded; 265 of 371 were described as disease‐causing variants, whereas 106 were defined as modifier variants, including 34 functional variants identified by a quantitative trait association study of this high‐throughput sequencing data. Due to the availability of a comprehensive phenotype‐genotype data set, DASH has been established to automatically provide accurate suggestions on diagnosis and genetic counseling of hemoglobinopathies. LOVD‐DASH will inspire us to deal with clinical genotyping and molecular screening for other Mendelian disorders.
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spelling pubmed-68996102019-12-19 LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies Zhang, Li Zhang, Qianqian Tang, Yaohua Cong, Peikuan Ye, Yuhua Chen, Shiping Zhang, Xinhua Chen, Yan Zhu, Baosheng Cai, Wangwei Chen, Shaoke Cai, Ren Guo, Xiaoling Zhang, Chonglin Zhou, Yuqiu Zou, Jie Liu, Yanhui Chen, Biyan Yan, Shanhuo Chen, Yajun Zhou, Yuehong Ding, Hongmei Li, Xiarong Chen, Dianyu Zhong, Jianmei Shang, Xuan Liu, Xuanzhu Qi, Ming Xu, Xiangmin Hum Mutat Databases Hemoglobinopathies are the most common monogenic disorders worldwide. Substantial effort has been made to establish databases to record complete mutation spectra causing or modifying this group of diseases. We present a variant database which couples an online auxiliary diagnosis and at‐risk assessment system for hemoglobinopathies (DASH). The database was integrated into the Leiden Open Variation Database (LOVD), in which we included all reported variants focusing on a Chinese population by literature peer review‐curation and existing databases, such as HbVar and IthaGenes. In addition, comprehensive mutation data generated by high‐throughput sequencing of 2,087 hemoglobinopathy patients and 20,222 general individuals from southern China were also incorporated into the database. These sequencing data enabled us to observe disease‐causing and modifier variants responsible for hemoglobinopathies in bulk. Currently, 371 unique variants have been recorded; 265 of 371 were described as disease‐causing variants, whereas 106 were defined as modifier variants, including 34 functional variants identified by a quantitative trait association study of this high‐throughput sequencing data. Due to the availability of a comprehensive phenotype‐genotype data set, DASH has been established to automatically provide accurate suggestions on diagnosis and genetic counseling of hemoglobinopathies. LOVD‐DASH will inspire us to deal with clinical genotyping and molecular screening for other Mendelian disorders. John Wiley and Sons Inc. 2019-09-11 2019-12 /pmc/articles/PMC6899610/ /pubmed/31286593 http://dx.doi.org/10.1002/humu.23863 Text en © 2019 The Authors. Human Mutation Published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Databases
Zhang, Li
Zhang, Qianqian
Tang, Yaohua
Cong, Peikuan
Ye, Yuhua
Chen, Shiping
Zhang, Xinhua
Chen, Yan
Zhu, Baosheng
Cai, Wangwei
Chen, Shaoke
Cai, Ren
Guo, Xiaoling
Zhang, Chonglin
Zhou, Yuqiu
Zou, Jie
Liu, Yanhui
Chen, Biyan
Yan, Shanhuo
Chen, Yajun
Zhou, Yuehong
Ding, Hongmei
Li, Xiarong
Chen, Dianyu
Zhong, Jianmei
Shang, Xuan
Liu, Xuanzhu
Qi, Ming
Xu, Xiangmin
LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies
title LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies
title_full LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies
title_fullStr LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies
title_full_unstemmed LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies
title_short LOVD–DASH: A comprehensive LOVD database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies
title_sort lovd–dash: a comprehensive lovd database coupled with diagnosis and an at‐risk assessment system for hemoglobinopathies
topic Databases
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6899610/
https://www.ncbi.nlm.nih.gov/pubmed/31286593
http://dx.doi.org/10.1002/humu.23863
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