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Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast Cancer
BACKGROUND: Breast cancer is one of the most common malignant tumor type in women worldwide. BARD1 could impact function of BRCA1 as its interaction partner. In the current study, we aimed to investigate the prognostic role of BARD1 expression as well as its alterations in breast cancer using differ...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6900616/ https://www.ncbi.nlm.nih.gov/pubmed/31808361 http://dx.doi.org/10.1177/1533033819892260 |
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author | Chen, Yong-Zi Zuo, Duo Ren, Hai-Ling Fan, Sai-Jun Ying, Guoguang |
author_facet | Chen, Yong-Zi Zuo, Duo Ren, Hai-Ling Fan, Sai-Jun Ying, Guoguang |
author_sort | Chen, Yong-Zi |
collection | PubMed |
description | BACKGROUND: Breast cancer is one of the most common malignant tumor type in women worldwide. BARD1 could impact function of BRCA1 as its interaction partner. In the current study, we aimed to investigate the prognostic role of BARD1 expression as well as its alterations in breast cancer using different online tools. METHODS: We performed a bioinformatics analysis for BARD1 in patients with breast cancer using several online databases, including Oncomine, bc-GenExMiner, PrognoScan, Search Tool for the Retrieval of Interacting Genes, Cytoscape, and cBioPortal. RESULTS: We found that BARD1 was highly expressed in basal-like, HER2-E, and luminal B compared with normal-like subtype. Forest plot showed that BARD1 overexpression was correlated with worse distant metastasis-free survival (hazard ratio: 2.72, 95% confidence interval: 1.02-2.21; P = .0448), disease-specific survival (hazard ratio: 2.65, 95% confidence interval: 1.37-5.12; P = .0037), and disease-free survival (hazard ratio: 1.98, 95% confidence interval: 1.22-3.24; P = .0062) but positively correlated with overall survival (hazard ratio: 0.66, 95% confidence interval: 0.50-0.85; P = .0017). Multivariate analysis indicated that BARD1 expression was significantly associated with distant metastasis-free survival (hazard ratio: 4.60, 95% confidence interval: 1.22-17.28; P = .0239) whereas marginally significant for disease-free survival (hazard ratio: 1.00, 95% confidence interval: 1.00-1.01, P = .0630) and disease-specific survival (hazard ratio: 1.96, 95% confidence interval: 0.97-3.96; P = .0602). Meanwhile, alterations in BARD1 interaction network were associated with worse overall survival instead of BARD1 alteration alone. CONCLUSIONS: Bioinformatics analysis revealed that BARD1 may be a predictive biomarker for prognosis of breast cancer. However, future research is required to validate our findings. |
format | Online Article Text |
id | pubmed-6900616 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-69006162019-12-13 Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast Cancer Chen, Yong-Zi Zuo, Duo Ren, Hai-Ling Fan, Sai-Jun Ying, Guoguang Technol Cancer Res Treat Original Article BACKGROUND: Breast cancer is one of the most common malignant tumor type in women worldwide. BARD1 could impact function of BRCA1 as its interaction partner. In the current study, we aimed to investigate the prognostic role of BARD1 expression as well as its alterations in breast cancer using different online tools. METHODS: We performed a bioinformatics analysis for BARD1 in patients with breast cancer using several online databases, including Oncomine, bc-GenExMiner, PrognoScan, Search Tool for the Retrieval of Interacting Genes, Cytoscape, and cBioPortal. RESULTS: We found that BARD1 was highly expressed in basal-like, HER2-E, and luminal B compared with normal-like subtype. Forest plot showed that BARD1 overexpression was correlated with worse distant metastasis-free survival (hazard ratio: 2.72, 95% confidence interval: 1.02-2.21; P = .0448), disease-specific survival (hazard ratio: 2.65, 95% confidence interval: 1.37-5.12; P = .0037), and disease-free survival (hazard ratio: 1.98, 95% confidence interval: 1.22-3.24; P = .0062) but positively correlated with overall survival (hazard ratio: 0.66, 95% confidence interval: 0.50-0.85; P = .0017). Multivariate analysis indicated that BARD1 expression was significantly associated with distant metastasis-free survival (hazard ratio: 4.60, 95% confidence interval: 1.22-17.28; P = .0239) whereas marginally significant for disease-free survival (hazard ratio: 1.00, 95% confidence interval: 1.00-1.01, P = .0630) and disease-specific survival (hazard ratio: 1.96, 95% confidence interval: 0.97-3.96; P = .0602). Meanwhile, alterations in BARD1 interaction network were associated with worse overall survival instead of BARD1 alteration alone. CONCLUSIONS: Bioinformatics analysis revealed that BARD1 may be a predictive biomarker for prognosis of breast cancer. However, future research is required to validate our findings. SAGE Publications 2019-12-06 /pmc/articles/PMC6900616/ /pubmed/31808361 http://dx.doi.org/10.1177/1533033819892260 Text en © The Author(s) 2019 http://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (http://www.creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Original Article Chen, Yong-Zi Zuo, Duo Ren, Hai-Ling Fan, Sai-Jun Ying, Guoguang Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast Cancer |
title | Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast
Cancer |
title_full | Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast
Cancer |
title_fullStr | Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast
Cancer |
title_full_unstemmed | Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast
Cancer |
title_short | Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast
Cancer |
title_sort | bioinformatics analysis of expression and alterations of bard1 in breast
cancer |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6900616/ https://www.ncbi.nlm.nih.gov/pubmed/31808361 http://dx.doi.org/10.1177/1533033819892260 |
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