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Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast Cancer

BACKGROUND: Breast cancer is one of the most common malignant tumor type in women worldwide. BARD1 could impact function of BRCA1 as its interaction partner. In the current study, we aimed to investigate the prognostic role of BARD1 expression as well as its alterations in breast cancer using differ...

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Autores principales: Chen, Yong-Zi, Zuo, Duo, Ren, Hai-Ling, Fan, Sai-Jun, Ying, Guoguang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6900616/
https://www.ncbi.nlm.nih.gov/pubmed/31808361
http://dx.doi.org/10.1177/1533033819892260
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author Chen, Yong-Zi
Zuo, Duo
Ren, Hai-Ling
Fan, Sai-Jun
Ying, Guoguang
author_facet Chen, Yong-Zi
Zuo, Duo
Ren, Hai-Ling
Fan, Sai-Jun
Ying, Guoguang
author_sort Chen, Yong-Zi
collection PubMed
description BACKGROUND: Breast cancer is one of the most common malignant tumor type in women worldwide. BARD1 could impact function of BRCA1 as its interaction partner. In the current study, we aimed to investigate the prognostic role of BARD1 expression as well as its alterations in breast cancer using different online tools. METHODS: We performed a bioinformatics analysis for BARD1 in patients with breast cancer using several online databases, including Oncomine, bc-GenExMiner, PrognoScan, Search Tool for the Retrieval of Interacting Genes, Cytoscape, and cBioPortal. RESULTS: We found that BARD1 was highly expressed in basal-like, HER2-E, and luminal B compared with normal-like subtype. Forest plot showed that BARD1 overexpression was correlated with worse distant metastasis-free survival (hazard ratio: 2.72, 95% confidence interval: 1.02-2.21; P = .0448), disease-specific survival (hazard ratio: 2.65, 95% confidence interval: 1.37-5.12; P = .0037), and disease-free survival (hazard ratio: 1.98, 95% confidence interval: 1.22-3.24; P = .0062) but positively correlated with overall survival (hazard ratio: 0.66, 95% confidence interval: 0.50-0.85; P = .0017). Multivariate analysis indicated that BARD1 expression was significantly associated with distant metastasis-free survival (hazard ratio: 4.60, 95% confidence interval: 1.22-17.28; P = .0239) whereas marginally significant for disease-free survival (hazard ratio: 1.00, 95% confidence interval: 1.00-1.01, P = .0630) and disease-specific survival (hazard ratio: 1.96, 95% confidence interval: 0.97-3.96; P = .0602). Meanwhile, alterations in BARD1 interaction network were associated with worse overall survival instead of BARD1 alteration alone. CONCLUSIONS: Bioinformatics analysis revealed that BARD1 may be a predictive biomarker for prognosis of breast cancer. However, future research is required to validate our findings.
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spelling pubmed-69006162019-12-13 Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast Cancer Chen, Yong-Zi Zuo, Duo Ren, Hai-Ling Fan, Sai-Jun Ying, Guoguang Technol Cancer Res Treat Original Article BACKGROUND: Breast cancer is one of the most common malignant tumor type in women worldwide. BARD1 could impact function of BRCA1 as its interaction partner. In the current study, we aimed to investigate the prognostic role of BARD1 expression as well as its alterations in breast cancer using different online tools. METHODS: We performed a bioinformatics analysis for BARD1 in patients with breast cancer using several online databases, including Oncomine, bc-GenExMiner, PrognoScan, Search Tool for the Retrieval of Interacting Genes, Cytoscape, and cBioPortal. RESULTS: We found that BARD1 was highly expressed in basal-like, HER2-E, and luminal B compared with normal-like subtype. Forest plot showed that BARD1 overexpression was correlated with worse distant metastasis-free survival (hazard ratio: 2.72, 95% confidence interval: 1.02-2.21; P = .0448), disease-specific survival (hazard ratio: 2.65, 95% confidence interval: 1.37-5.12; P = .0037), and disease-free survival (hazard ratio: 1.98, 95% confidence interval: 1.22-3.24; P = .0062) but positively correlated with overall survival (hazard ratio: 0.66, 95% confidence interval: 0.50-0.85; P = .0017). Multivariate analysis indicated that BARD1 expression was significantly associated with distant metastasis-free survival (hazard ratio: 4.60, 95% confidence interval: 1.22-17.28; P = .0239) whereas marginally significant for disease-free survival (hazard ratio: 1.00, 95% confidence interval: 1.00-1.01, P = .0630) and disease-specific survival (hazard ratio: 1.96, 95% confidence interval: 0.97-3.96; P = .0602). Meanwhile, alterations in BARD1 interaction network were associated with worse overall survival instead of BARD1 alteration alone. CONCLUSIONS: Bioinformatics analysis revealed that BARD1 may be a predictive biomarker for prognosis of breast cancer. However, future research is required to validate our findings. SAGE Publications 2019-12-06 /pmc/articles/PMC6900616/ /pubmed/31808361 http://dx.doi.org/10.1177/1533033819892260 Text en © The Author(s) 2019 http://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (http://www.creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Original Article
Chen, Yong-Zi
Zuo, Duo
Ren, Hai-Ling
Fan, Sai-Jun
Ying, Guoguang
Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast Cancer
title Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast Cancer
title_full Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast Cancer
title_fullStr Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast Cancer
title_full_unstemmed Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast Cancer
title_short Bioinformatics Analysis of Expression and Alterations of BARD1 in Breast Cancer
title_sort bioinformatics analysis of expression and alterations of bard1 in breast cancer
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6900616/
https://www.ncbi.nlm.nih.gov/pubmed/31808361
http://dx.doi.org/10.1177/1533033819892260
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