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Scaling of species distribution explains the vast potential marine prokaryote diversity

Global ocean expeditions have provided minimum estimates of ocean’s prokaryote diversity, supported by apparent asymptotes in the number of prokaryotes with sampling effort, of about 40,000 species, representing <1% of the species cataloged in the Earth Microbiome Project, despite being the large...

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Autores principales: Eguíluz, Victor M., Salazar, Guillem, Fernández-Gracia, Juan, Pearman, John K., Gasol, Josep M., Acinas, Silvia G., Sunagawa, Shinichi, Irigoien, Xabier, Duarte, Carlos M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6904450/
https://www.ncbi.nlm.nih.gov/pubmed/31822687
http://dx.doi.org/10.1038/s41598-019-54936-y
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author Eguíluz, Victor M.
Salazar, Guillem
Fernández-Gracia, Juan
Pearman, John K.
Gasol, Josep M.
Acinas, Silvia G.
Sunagawa, Shinichi
Irigoien, Xabier
Duarte, Carlos M.
author_facet Eguíluz, Victor M.
Salazar, Guillem
Fernández-Gracia, Juan
Pearman, John K.
Gasol, Josep M.
Acinas, Silvia G.
Sunagawa, Shinichi
Irigoien, Xabier
Duarte, Carlos M.
author_sort Eguíluz, Victor M.
collection PubMed
description Global ocean expeditions have provided minimum estimates of ocean’s prokaryote diversity, supported by apparent asymptotes in the number of prokaryotes with sampling effort, of about 40,000 species, representing <1% of the species cataloged in the Earth Microbiome Project, despite being the largest habitat in the biosphere. Here we demonstrate that the abundance of prokaryote OTUs follows a scaling that can be represented by a power-law distribution, and as a consequence, we demonstrate, mathematically and through simulations, that the asymptote of rarefaction curves is an apparent one, which is only reached with sample sizes approaching the entire ecosystem. We experimentally confirm these findings using exhaustive repeated sampling of a prokaryote community in the Red Sea and the exploration of global assessments of prokaryote diversity in the ocean. Our findings indicate that, far from having achieved a thorough sampling of prokaryote species abundance in the ocean, global expeditions provide just a start for this quest as the richness in the global ocean is much larger than estimated.
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spelling pubmed-69044502019-12-13 Scaling of species distribution explains the vast potential marine prokaryote diversity Eguíluz, Victor M. Salazar, Guillem Fernández-Gracia, Juan Pearman, John K. Gasol, Josep M. Acinas, Silvia G. Sunagawa, Shinichi Irigoien, Xabier Duarte, Carlos M. Sci Rep Article Global ocean expeditions have provided minimum estimates of ocean’s prokaryote diversity, supported by apparent asymptotes in the number of prokaryotes with sampling effort, of about 40,000 species, representing <1% of the species cataloged in the Earth Microbiome Project, despite being the largest habitat in the biosphere. Here we demonstrate that the abundance of prokaryote OTUs follows a scaling that can be represented by a power-law distribution, and as a consequence, we demonstrate, mathematically and through simulations, that the asymptote of rarefaction curves is an apparent one, which is only reached with sample sizes approaching the entire ecosystem. We experimentally confirm these findings using exhaustive repeated sampling of a prokaryote community in the Red Sea and the exploration of global assessments of prokaryote diversity in the ocean. Our findings indicate that, far from having achieved a thorough sampling of prokaryote species abundance in the ocean, global expeditions provide just a start for this quest as the richness in the global ocean is much larger than estimated. Nature Publishing Group UK 2019-12-10 /pmc/articles/PMC6904450/ /pubmed/31822687 http://dx.doi.org/10.1038/s41598-019-54936-y Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Eguíluz, Victor M.
Salazar, Guillem
Fernández-Gracia, Juan
Pearman, John K.
Gasol, Josep M.
Acinas, Silvia G.
Sunagawa, Shinichi
Irigoien, Xabier
Duarte, Carlos M.
Scaling of species distribution explains the vast potential marine prokaryote diversity
title Scaling of species distribution explains the vast potential marine prokaryote diversity
title_full Scaling of species distribution explains the vast potential marine prokaryote diversity
title_fullStr Scaling of species distribution explains the vast potential marine prokaryote diversity
title_full_unstemmed Scaling of species distribution explains the vast potential marine prokaryote diversity
title_short Scaling of species distribution explains the vast potential marine prokaryote diversity
title_sort scaling of species distribution explains the vast potential marine prokaryote diversity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6904450/
https://www.ncbi.nlm.nih.gov/pubmed/31822687
http://dx.doi.org/10.1038/s41598-019-54936-y
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