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Scaling of species distribution explains the vast potential marine prokaryote diversity
Global ocean expeditions have provided minimum estimates of ocean’s prokaryote diversity, supported by apparent asymptotes in the number of prokaryotes with sampling effort, of about 40,000 species, representing <1% of the species cataloged in the Earth Microbiome Project, despite being the large...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6904450/ https://www.ncbi.nlm.nih.gov/pubmed/31822687 http://dx.doi.org/10.1038/s41598-019-54936-y |
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author | Eguíluz, Victor M. Salazar, Guillem Fernández-Gracia, Juan Pearman, John K. Gasol, Josep M. Acinas, Silvia G. Sunagawa, Shinichi Irigoien, Xabier Duarte, Carlos M. |
author_facet | Eguíluz, Victor M. Salazar, Guillem Fernández-Gracia, Juan Pearman, John K. Gasol, Josep M. Acinas, Silvia G. Sunagawa, Shinichi Irigoien, Xabier Duarte, Carlos M. |
author_sort | Eguíluz, Victor M. |
collection | PubMed |
description | Global ocean expeditions have provided minimum estimates of ocean’s prokaryote diversity, supported by apparent asymptotes in the number of prokaryotes with sampling effort, of about 40,000 species, representing <1% of the species cataloged in the Earth Microbiome Project, despite being the largest habitat in the biosphere. Here we demonstrate that the abundance of prokaryote OTUs follows a scaling that can be represented by a power-law distribution, and as a consequence, we demonstrate, mathematically and through simulations, that the asymptote of rarefaction curves is an apparent one, which is only reached with sample sizes approaching the entire ecosystem. We experimentally confirm these findings using exhaustive repeated sampling of a prokaryote community in the Red Sea and the exploration of global assessments of prokaryote diversity in the ocean. Our findings indicate that, far from having achieved a thorough sampling of prokaryote species abundance in the ocean, global expeditions provide just a start for this quest as the richness in the global ocean is much larger than estimated. |
format | Online Article Text |
id | pubmed-6904450 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-69044502019-12-13 Scaling of species distribution explains the vast potential marine prokaryote diversity Eguíluz, Victor M. Salazar, Guillem Fernández-Gracia, Juan Pearman, John K. Gasol, Josep M. Acinas, Silvia G. Sunagawa, Shinichi Irigoien, Xabier Duarte, Carlos M. Sci Rep Article Global ocean expeditions have provided minimum estimates of ocean’s prokaryote diversity, supported by apparent asymptotes in the number of prokaryotes with sampling effort, of about 40,000 species, representing <1% of the species cataloged in the Earth Microbiome Project, despite being the largest habitat in the biosphere. Here we demonstrate that the abundance of prokaryote OTUs follows a scaling that can be represented by a power-law distribution, and as a consequence, we demonstrate, mathematically and through simulations, that the asymptote of rarefaction curves is an apparent one, which is only reached with sample sizes approaching the entire ecosystem. We experimentally confirm these findings using exhaustive repeated sampling of a prokaryote community in the Red Sea and the exploration of global assessments of prokaryote diversity in the ocean. Our findings indicate that, far from having achieved a thorough sampling of prokaryote species abundance in the ocean, global expeditions provide just a start for this quest as the richness in the global ocean is much larger than estimated. Nature Publishing Group UK 2019-12-10 /pmc/articles/PMC6904450/ /pubmed/31822687 http://dx.doi.org/10.1038/s41598-019-54936-y Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Eguíluz, Victor M. Salazar, Guillem Fernández-Gracia, Juan Pearman, John K. Gasol, Josep M. Acinas, Silvia G. Sunagawa, Shinichi Irigoien, Xabier Duarte, Carlos M. Scaling of species distribution explains the vast potential marine prokaryote diversity |
title | Scaling of species distribution explains the vast potential marine prokaryote diversity |
title_full | Scaling of species distribution explains the vast potential marine prokaryote diversity |
title_fullStr | Scaling of species distribution explains the vast potential marine prokaryote diversity |
title_full_unstemmed | Scaling of species distribution explains the vast potential marine prokaryote diversity |
title_short | Scaling of species distribution explains the vast potential marine prokaryote diversity |
title_sort | scaling of species distribution explains the vast potential marine prokaryote diversity |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6904450/ https://www.ncbi.nlm.nih.gov/pubmed/31822687 http://dx.doi.org/10.1038/s41598-019-54936-y |
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