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TasselNetv2: in-field counting of wheat spikes with context-augmented local regression networks
BACKGROUND: Grain yield of wheat is greatly associated with the population of wheat spikes, i.e., [Formula: see text] . To obtain this index in a reliable and efficient way, it is necessary to count wheat spikes accurately and automatically. Currently computer vision technologies have shown great po...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6905110/ https://www.ncbi.nlm.nih.gov/pubmed/31857821 http://dx.doi.org/10.1186/s13007-019-0537-2 |
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author | Xiong, Haipeng Cao, Zhiguo Lu, Hao Madec, Simon Liu, Liang Shen, Chunhua |
author_facet | Xiong, Haipeng Cao, Zhiguo Lu, Hao Madec, Simon Liu, Liang Shen, Chunhua |
author_sort | Xiong, Haipeng |
collection | PubMed |
description | BACKGROUND: Grain yield of wheat is greatly associated with the population of wheat spikes, i.e., [Formula: see text] . To obtain this index in a reliable and efficient way, it is necessary to count wheat spikes accurately and automatically. Currently computer vision technologies have shown great potential to automate this task effectively in a low-end manner. In particular, counting wheat spikes is a typical visual counting problem, which is substantially studied under the name of object counting in Computer Vision. TasselNet, which represents one of the state-of-the-art counting approaches, is a convolutional neural network-based local regression model, and currently benchmarks the best record on counting maize tassels. However, when applying TasselNet to wheat spikes, it cannot predict accurate counts when spikes partially present. RESULTS: In this paper, we make an important observation that the counting performance of local regression networks can be significantly improved via adding visual context to the local patches. Meanwhile, such context can be treated as part of the receptive field without increasing the model capacity. We thus propose a simple yet effective contextual extension of TasselNet—TasselNetv2. If implementing TasselNetv2 in a fully convolutional form, both training and inference can be greatly sped up by reducing redundant computations. In particular, we collected and labeled a large-scale wheat spikes counting (WSC) dataset, with 1764 high-resolution images and 675,322 manually-annotated instances. Extensive experiments show that, TasselNetv2 not only achieves state-of-the-art performance on the WSC dataset ([Formula: see text] counting accuracy) but also is more than an order of magnitude faster than TasselNet (13.82 fps on [Formula: see text] images). The generality of TasselNetv2 is further demonstrated by advancing the state of the art on both the Maize Tassels Counting and ShanghaiTech Crowd Counting datasets. CONCLUSIONS: This paper describes TasselNetv2 for counting wheat spikes, which simultaneously addresses two important use cases in plant counting: improving the counting accuracy without increasing model capacity, and improving efficiency without sacrificing accuracy. It is promising to be deployed in a real-time system with high-throughput demand. In particular, TasselNetv2 can achieve sufficiently accurate results when training from scratch with small networks, and adopting larger pre-trained networks can further boost accuracy. In practice, one can trade off the performance and efficiency according to certain application scenarios. Code and models are made available at: https://tinyurl.com/TasselNetv2. |
format | Online Article Text |
id | pubmed-6905110 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-69051102019-12-19 TasselNetv2: in-field counting of wheat spikes with context-augmented local regression networks Xiong, Haipeng Cao, Zhiguo Lu, Hao Madec, Simon Liu, Liang Shen, Chunhua Plant Methods Research BACKGROUND: Grain yield of wheat is greatly associated with the population of wheat spikes, i.e., [Formula: see text] . To obtain this index in a reliable and efficient way, it is necessary to count wheat spikes accurately and automatically. Currently computer vision technologies have shown great potential to automate this task effectively in a low-end manner. In particular, counting wheat spikes is a typical visual counting problem, which is substantially studied under the name of object counting in Computer Vision. TasselNet, which represents one of the state-of-the-art counting approaches, is a convolutional neural network-based local regression model, and currently benchmarks the best record on counting maize tassels. However, when applying TasselNet to wheat spikes, it cannot predict accurate counts when spikes partially present. RESULTS: In this paper, we make an important observation that the counting performance of local regression networks can be significantly improved via adding visual context to the local patches. Meanwhile, such context can be treated as part of the receptive field without increasing the model capacity. We thus propose a simple yet effective contextual extension of TasselNet—TasselNetv2. If implementing TasselNetv2 in a fully convolutional form, both training and inference can be greatly sped up by reducing redundant computations. In particular, we collected and labeled a large-scale wheat spikes counting (WSC) dataset, with 1764 high-resolution images and 675,322 manually-annotated instances. Extensive experiments show that, TasselNetv2 not only achieves state-of-the-art performance on the WSC dataset ([Formula: see text] counting accuracy) but also is more than an order of magnitude faster than TasselNet (13.82 fps on [Formula: see text] images). The generality of TasselNetv2 is further demonstrated by advancing the state of the art on both the Maize Tassels Counting and ShanghaiTech Crowd Counting datasets. CONCLUSIONS: This paper describes TasselNetv2 for counting wheat spikes, which simultaneously addresses two important use cases in plant counting: improving the counting accuracy without increasing model capacity, and improving efficiency without sacrificing accuracy. It is promising to be deployed in a real-time system with high-throughput demand. In particular, TasselNetv2 can achieve sufficiently accurate results when training from scratch with small networks, and adopting larger pre-trained networks can further boost accuracy. In practice, one can trade off the performance and efficiency according to certain application scenarios. Code and models are made available at: https://tinyurl.com/TasselNetv2. BioMed Central 2019-12-11 /pmc/articles/PMC6905110/ /pubmed/31857821 http://dx.doi.org/10.1186/s13007-019-0537-2 Text en © The Author(s) 2019 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Research Xiong, Haipeng Cao, Zhiguo Lu, Hao Madec, Simon Liu, Liang Shen, Chunhua TasselNetv2: in-field counting of wheat spikes with context-augmented local regression networks |
title | TasselNetv2: in-field counting of wheat spikes with context-augmented local regression networks |
title_full | TasselNetv2: in-field counting of wheat spikes with context-augmented local regression networks |
title_fullStr | TasselNetv2: in-field counting of wheat spikes with context-augmented local regression networks |
title_full_unstemmed | TasselNetv2: in-field counting of wheat spikes with context-augmented local regression networks |
title_short | TasselNetv2: in-field counting of wheat spikes with context-augmented local regression networks |
title_sort | tasselnetv2: in-field counting of wheat spikes with context-augmented local regression networks |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6905110/ https://www.ncbi.nlm.nih.gov/pubmed/31857821 http://dx.doi.org/10.1186/s13007-019-0537-2 |
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