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Diffusion Tensors of Arbitrary-Shaped Nanoparticles in Fluid by Molecular Dynamics Simulation

The anisotropic diffusive behavior of nanoparticles with complex shapes attracts great interest due to its potential applications in many fields ranging from bionics to aeronautic industry. Although molecular dynamics (MD) simulations are used widely to investigate nanoparticle diffusion properties,...

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Detalles Bibliográficos
Autores principales: Zhang, Zi-Tong, Zhao, Xin, Cao, Bing-Yang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6908649/
https://www.ncbi.nlm.nih.gov/pubmed/31831762
http://dx.doi.org/10.1038/s41598-019-55042-9
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author Zhang, Zi-Tong
Zhao, Xin
Cao, Bing-Yang
author_facet Zhang, Zi-Tong
Zhao, Xin
Cao, Bing-Yang
author_sort Zhang, Zi-Tong
collection PubMed
description The anisotropic diffusive behavior of nanoparticles with complex shapes attracts great interest due to its potential applications in many fields ranging from bionics to aeronautic industry. Although molecular dynamics (MD) simulations are used widely to investigate nanoparticle diffusion properties, universal methods to describe the diffusion process comprehensively are still lacking. Here, we address this problem by introducing diffusion tensor as it can describe translational and rotational diffusion in three dimensions both individually and their coupling. We take carbon triple sphere suspended in argon fluid as our model system. The consistency of our results and velocity autocorrelation function(VAF) method validates our simulations. The coupling between translational and rotational diffusion is observed directly from analyzing diffusion tensor, and quantified by coupling diffusion coefficient. Our simulation reveals non-trivial effect of some factors in diffusion at nanoscale, which was not considered in previous theories. In addition to introducing an effective method to calculate the diffusion tensor in MD simulations, our work also provides insights for understanding the diffusion process of arbitrary-shaped particles in nanoengineering.
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spelling pubmed-69086492019-12-16 Diffusion Tensors of Arbitrary-Shaped Nanoparticles in Fluid by Molecular Dynamics Simulation Zhang, Zi-Tong Zhao, Xin Cao, Bing-Yang Sci Rep Article The anisotropic diffusive behavior of nanoparticles with complex shapes attracts great interest due to its potential applications in many fields ranging from bionics to aeronautic industry. Although molecular dynamics (MD) simulations are used widely to investigate nanoparticle diffusion properties, universal methods to describe the diffusion process comprehensively are still lacking. Here, we address this problem by introducing diffusion tensor as it can describe translational and rotational diffusion in three dimensions both individually and their coupling. We take carbon triple sphere suspended in argon fluid as our model system. The consistency of our results and velocity autocorrelation function(VAF) method validates our simulations. The coupling between translational and rotational diffusion is observed directly from analyzing diffusion tensor, and quantified by coupling diffusion coefficient. Our simulation reveals non-trivial effect of some factors in diffusion at nanoscale, which was not considered in previous theories. In addition to introducing an effective method to calculate the diffusion tensor in MD simulations, our work also provides insights for understanding the diffusion process of arbitrary-shaped particles in nanoengineering. Nature Publishing Group UK 2019-12-12 /pmc/articles/PMC6908649/ /pubmed/31831762 http://dx.doi.org/10.1038/s41598-019-55042-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Zhang, Zi-Tong
Zhao, Xin
Cao, Bing-Yang
Diffusion Tensors of Arbitrary-Shaped Nanoparticles in Fluid by Molecular Dynamics Simulation
title Diffusion Tensors of Arbitrary-Shaped Nanoparticles in Fluid by Molecular Dynamics Simulation
title_full Diffusion Tensors of Arbitrary-Shaped Nanoparticles in Fluid by Molecular Dynamics Simulation
title_fullStr Diffusion Tensors of Arbitrary-Shaped Nanoparticles in Fluid by Molecular Dynamics Simulation
title_full_unstemmed Diffusion Tensors of Arbitrary-Shaped Nanoparticles in Fluid by Molecular Dynamics Simulation
title_short Diffusion Tensors of Arbitrary-Shaped Nanoparticles in Fluid by Molecular Dynamics Simulation
title_sort diffusion tensors of arbitrary-shaped nanoparticles in fluid by molecular dynamics simulation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6908649/
https://www.ncbi.nlm.nih.gov/pubmed/31831762
http://dx.doi.org/10.1038/s41598-019-55042-9
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