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The landscape and prognostic value of tumor-infiltrating immune cells in gastric cancer

BACKGROUND: Gastric cancer (GC) is the fourth most frequently diagnosed malignancy and the second leading cause of cancer-associated mortality worldwide. The tumor microenvironment, especially tumor-infiltrating immune cells (TIICs), exhibits crucial roles both in promoting and inhibiting cancer gro...

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Autores principales: Li, Linhai, Ouyang, Yiming, Wang, Wenrong, Hou, Dezhi, Zhu, Yu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6910118/
https://www.ncbi.nlm.nih.gov/pubmed/31844561
http://dx.doi.org/10.7717/peerj.7993
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author Li, Linhai
Ouyang, Yiming
Wang, Wenrong
Hou, Dezhi
Zhu, Yu
author_facet Li, Linhai
Ouyang, Yiming
Wang, Wenrong
Hou, Dezhi
Zhu, Yu
author_sort Li, Linhai
collection PubMed
description BACKGROUND: Gastric cancer (GC) is the fourth most frequently diagnosed malignancy and the second leading cause of cancer-associated mortality worldwide. The tumor microenvironment, especially tumor-infiltrating immune cells (TIICs), exhibits crucial roles both in promoting and inhibiting cancer growth. The aim of the present study was to evaluate the landscape of TIICs and develop a prognostic nomogram in GC. MATERIALS AND METHODS: A gene expression profile obtained from a dataset from The Cancer Genome Atlas (TCGA) was used to quantify the proportion of 22 TIICs in GC by the CIBERSORT algorithm. LASSO regression analysis and multivariate Cox regression were applied to select the best survival-related TIICs and develop an immunoscore formula. Based on the immunoscore and clinical information, a prognostic nomogram was built, and the predictive accuracy of it was evaluated by the area under the curve (AUC) of the receiver operating characteristic curve (ROC) and the calibration plot. Furthermore, the nomogram was validated by data from the International Cancer Genome Consortium (ICGC) dataset. RESULTS: In the GC samples, macrophages (25.3%), resting memory CD4 T cells (16.2%) and CD8 T cells (9.7%) were the most abundant among 22 TIICs. Seven TIICs were filtered out and used to develop an immunoscore formula. The AUC of the prognostic nomogram in the TCGA set was 0.772, similar to that in the ICGC set (0.730) and whole set (0.748), and significantly superior to that of TNM staging alone (0.591). The calibration plot demonstrated an outstanding consistency between the prediction and actual observation. Survival analysis revealed that patients with GC in the high-immunoscore group exhibited a poor clinical outcome. The result of multivariate analysis revealed that the immunoscore was an independent prognostic factor. DISCUSSION: The immunoscore could be used to reinforce the clinical outcome prediction ability of the TNM staging system and provide a convenient tool for risk assessment and treatment selection for patients with GC.
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spelling pubmed-69101182019-12-16 The landscape and prognostic value of tumor-infiltrating immune cells in gastric cancer Li, Linhai Ouyang, Yiming Wang, Wenrong Hou, Dezhi Zhu, Yu PeerJ Bioinformatics BACKGROUND: Gastric cancer (GC) is the fourth most frequently diagnosed malignancy and the second leading cause of cancer-associated mortality worldwide. The tumor microenvironment, especially tumor-infiltrating immune cells (TIICs), exhibits crucial roles both in promoting and inhibiting cancer growth. The aim of the present study was to evaluate the landscape of TIICs and develop a prognostic nomogram in GC. MATERIALS AND METHODS: A gene expression profile obtained from a dataset from The Cancer Genome Atlas (TCGA) was used to quantify the proportion of 22 TIICs in GC by the CIBERSORT algorithm. LASSO regression analysis and multivariate Cox regression were applied to select the best survival-related TIICs and develop an immunoscore formula. Based on the immunoscore and clinical information, a prognostic nomogram was built, and the predictive accuracy of it was evaluated by the area under the curve (AUC) of the receiver operating characteristic curve (ROC) and the calibration plot. Furthermore, the nomogram was validated by data from the International Cancer Genome Consortium (ICGC) dataset. RESULTS: In the GC samples, macrophages (25.3%), resting memory CD4 T cells (16.2%) and CD8 T cells (9.7%) were the most abundant among 22 TIICs. Seven TIICs were filtered out and used to develop an immunoscore formula. The AUC of the prognostic nomogram in the TCGA set was 0.772, similar to that in the ICGC set (0.730) and whole set (0.748), and significantly superior to that of TNM staging alone (0.591). The calibration plot demonstrated an outstanding consistency between the prediction and actual observation. Survival analysis revealed that patients with GC in the high-immunoscore group exhibited a poor clinical outcome. The result of multivariate analysis revealed that the immunoscore was an independent prognostic factor. DISCUSSION: The immunoscore could be used to reinforce the clinical outcome prediction ability of the TNM staging system and provide a convenient tool for risk assessment and treatment selection for patients with GC. PeerJ Inc. 2019-12-10 /pmc/articles/PMC6910118/ /pubmed/31844561 http://dx.doi.org/10.7717/peerj.7993 Text en ©2019 Li et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Bioinformatics
Li, Linhai
Ouyang, Yiming
Wang, Wenrong
Hou, Dezhi
Zhu, Yu
The landscape and prognostic value of tumor-infiltrating immune cells in gastric cancer
title The landscape and prognostic value of tumor-infiltrating immune cells in gastric cancer
title_full The landscape and prognostic value of tumor-infiltrating immune cells in gastric cancer
title_fullStr The landscape and prognostic value of tumor-infiltrating immune cells in gastric cancer
title_full_unstemmed The landscape and prognostic value of tumor-infiltrating immune cells in gastric cancer
title_short The landscape and prognostic value of tumor-infiltrating immune cells in gastric cancer
title_sort landscape and prognostic value of tumor-infiltrating immune cells in gastric cancer
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6910118/
https://www.ncbi.nlm.nih.gov/pubmed/31844561
http://dx.doi.org/10.7717/peerj.7993
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