Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

BACKGROUND: Sequencing technology and assembly algorithms have matured to the point that high-quality de novo assembly is possible for large, repetitive genomes. Current assemblies traverse transposable elements (TEs) and provide an opportunity for comprehensive annotation of TEs. Numerous methods e...

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Detalles Bibliográficos
Autores principales: Ou, Shujun, Su, Weija, Liao, Yi, Chougule, Kapeel, Agda, Jireh R. A., Hellinga, Adam J., Lugo, Carlos Santiago Blanco, Elliott, Tyler A., Ware, Doreen, Peterson, Thomas, Jiang, Ning, Hirsch, Candice N., Hufford, Matthew B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913007/
https://www.ncbi.nlm.nih.gov/pubmed/31843001
http://dx.doi.org/10.1186/s13059-019-1905-y

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