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Exonuclease III-Regulated Target Cyclic Amplification-Based Single Nucleotide Polymorphism Detection Using Ultrathin Ternary Chalcogenide Nanosheets

Herein, we report that the ternary chalcogenide nanosheet exhibits different affinity toward oligonucleotides with different lengths and efficiently quenches the fluorescence of dye-labeled DNA probes. Based on these findings, as a proof-of-concept application, the ternary chalcogenide nanosheet is...

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Autores principales: Hu, Yanling, Tan, Chaoliang, Lin, Xin, Lai, Zhuangchai, Zhang, Xiao, Lu, Qipeng, Feng, Ning, Yang, Dongliang, Weng, Lixing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913186/
https://www.ncbi.nlm.nih.gov/pubmed/31921768
http://dx.doi.org/10.3389/fchem.2019.00844
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author Hu, Yanling
Tan, Chaoliang
Lin, Xin
Lai, Zhuangchai
Zhang, Xiao
Lu, Qipeng
Feng, Ning
Yang, Dongliang
Weng, Lixing
author_facet Hu, Yanling
Tan, Chaoliang
Lin, Xin
Lai, Zhuangchai
Zhang, Xiao
Lu, Qipeng
Feng, Ning
Yang, Dongliang
Weng, Lixing
author_sort Hu, Yanling
collection PubMed
description Herein, we report that the ternary chalcogenide nanosheet exhibits different affinity toward oligonucleotides with different lengths and efficiently quenches the fluorescence of dye-labeled DNA probes. Based on these findings, as a proof-of-concept application, the ternary chalcogenide nanosheet is used as a target cyclic amplification biosensor, showing high specificity in discriminating single-base mismatch. This simple strategy is fast and sensitive for the single nucleotide polymorphism detection. Ultralow detection limit of unlabeled target (250 fM) and high discrimination ratio (5%) in the mixture of perfect match (mutant-type) and single-base mismatch (wild-type) target are achieved. This sensing method is extensively compatible for the single nucleotide polymorphism detection in clinical samples, making it a promising tool for the mutation-based clinical diagnostic and genomic research.
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spelling pubmed-69131862020-01-09 Exonuclease III-Regulated Target Cyclic Amplification-Based Single Nucleotide Polymorphism Detection Using Ultrathin Ternary Chalcogenide Nanosheets Hu, Yanling Tan, Chaoliang Lin, Xin Lai, Zhuangchai Zhang, Xiao Lu, Qipeng Feng, Ning Yang, Dongliang Weng, Lixing Front Chem Chemistry Herein, we report that the ternary chalcogenide nanosheet exhibits different affinity toward oligonucleotides with different lengths and efficiently quenches the fluorescence of dye-labeled DNA probes. Based on these findings, as a proof-of-concept application, the ternary chalcogenide nanosheet is used as a target cyclic amplification biosensor, showing high specificity in discriminating single-base mismatch. This simple strategy is fast and sensitive for the single nucleotide polymorphism detection. Ultralow detection limit of unlabeled target (250 fM) and high discrimination ratio (5%) in the mixture of perfect match (mutant-type) and single-base mismatch (wild-type) target are achieved. This sensing method is extensively compatible for the single nucleotide polymorphism detection in clinical samples, making it a promising tool for the mutation-based clinical diagnostic and genomic research. Frontiers Media S.A. 2019-12-06 /pmc/articles/PMC6913186/ /pubmed/31921768 http://dx.doi.org/10.3389/fchem.2019.00844 Text en Copyright © 2019 Hu, Tan, Lin, Lai, Zhang, Lu, Feng, Yang and Weng. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Chemistry
Hu, Yanling
Tan, Chaoliang
Lin, Xin
Lai, Zhuangchai
Zhang, Xiao
Lu, Qipeng
Feng, Ning
Yang, Dongliang
Weng, Lixing
Exonuclease III-Regulated Target Cyclic Amplification-Based Single Nucleotide Polymorphism Detection Using Ultrathin Ternary Chalcogenide Nanosheets
title Exonuclease III-Regulated Target Cyclic Amplification-Based Single Nucleotide Polymorphism Detection Using Ultrathin Ternary Chalcogenide Nanosheets
title_full Exonuclease III-Regulated Target Cyclic Amplification-Based Single Nucleotide Polymorphism Detection Using Ultrathin Ternary Chalcogenide Nanosheets
title_fullStr Exonuclease III-Regulated Target Cyclic Amplification-Based Single Nucleotide Polymorphism Detection Using Ultrathin Ternary Chalcogenide Nanosheets
title_full_unstemmed Exonuclease III-Regulated Target Cyclic Amplification-Based Single Nucleotide Polymorphism Detection Using Ultrathin Ternary Chalcogenide Nanosheets
title_short Exonuclease III-Regulated Target Cyclic Amplification-Based Single Nucleotide Polymorphism Detection Using Ultrathin Ternary Chalcogenide Nanosheets
title_sort exonuclease iii-regulated target cyclic amplification-based single nucleotide polymorphism detection using ultrathin ternary chalcogenide nanosheets
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913186/
https://www.ncbi.nlm.nih.gov/pubmed/31921768
http://dx.doi.org/10.3389/fchem.2019.00844
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