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Genomic variant sharing: a position statement

Sharing de-identified genetic variant data via custom-built online repositories is essential for the practice of genomic medicine and is demonstrably beneficial to patients. Robust genetic diagnoses that inform medical management cannot be made accurately without reference to genetic test results fr...

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Autores principales: Wright, Caroline F., Ware, James S., Lucassen, Anneke M., Hall, Alison, Middleton, Anna, Rahman, Nazneen, Ellard, Sian, Firth, Helen V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913213/
https://www.ncbi.nlm.nih.gov/pubmed/31886409
http://dx.doi.org/10.12688/wellcomeopenres.15090.2
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author Wright, Caroline F.
Ware, James S.
Lucassen, Anneke M.
Hall, Alison
Middleton, Anna
Rahman, Nazneen
Ellard, Sian
Firth, Helen V.
author_facet Wright, Caroline F.
Ware, James S.
Lucassen, Anneke M.
Hall, Alison
Middleton, Anna
Rahman, Nazneen
Ellard, Sian
Firth, Helen V.
author_sort Wright, Caroline F.
collection PubMed
description Sharing de-identified genetic variant data via custom-built online repositories is essential for the practice of genomic medicine and is demonstrably beneficial to patients. Robust genetic diagnoses that inform medical management cannot be made accurately without reference to genetic test results from other patients, population controls and correlation with clinical context and family history. Errors in this process can result in delayed, missed or erroneous diagnoses, leading to inappropriate or missed medical interventions for the patient and their family. The benefits of sharing individual genetic variants, and the harms of not sharing them, are numerous and well-established. Databases and mechanisms already exist to facilitate deposition and sharing of de-identified genetic variants, but clarity and transparency around best practice is needed to encourage widespread use, prevent inconsistencies between different communities, maximise individual privacy and ensure public trust. We therefore recommend that widespread sharing of a small number of genetic variants per individual, associated with limited clinical information, should become standard practice in genomic medicine. Information confirming or refuting the role of genetic variants in specific conditions is fundamental scientific knowledge from which everyone has a right to benefit, and therefore should not require consent to share. For additional case-level detail about individual patients or more extensive genomic information, which is often essential for individual clinical interpretation, it may be more appropriate to use a controlled-access model for such data sharing, with the ultimate aim of making as much information available as possible with appropriate governance.
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spelling pubmed-69132132019-12-27 Genomic variant sharing: a position statement Wright, Caroline F. Ware, James S. Lucassen, Anneke M. Hall, Alison Middleton, Anna Rahman, Nazneen Ellard, Sian Firth, Helen V. Wellcome Open Res Open Letter Sharing de-identified genetic variant data via custom-built online repositories is essential for the practice of genomic medicine and is demonstrably beneficial to patients. Robust genetic diagnoses that inform medical management cannot be made accurately without reference to genetic test results from other patients, population controls and correlation with clinical context and family history. Errors in this process can result in delayed, missed or erroneous diagnoses, leading to inappropriate or missed medical interventions for the patient and their family. The benefits of sharing individual genetic variants, and the harms of not sharing them, are numerous and well-established. Databases and mechanisms already exist to facilitate deposition and sharing of de-identified genetic variants, but clarity and transparency around best practice is needed to encourage widespread use, prevent inconsistencies between different communities, maximise individual privacy and ensure public trust. We therefore recommend that widespread sharing of a small number of genetic variants per individual, associated with limited clinical information, should become standard practice in genomic medicine. Information confirming or refuting the role of genetic variants in specific conditions is fundamental scientific knowledge from which everyone has a right to benefit, and therefore should not require consent to share. For additional case-level detail about individual patients or more extensive genomic information, which is often essential for individual clinical interpretation, it may be more appropriate to use a controlled-access model for such data sharing, with the ultimate aim of making as much information available as possible with appropriate governance. F1000 Research Limited 2019-12-04 /pmc/articles/PMC6913213/ /pubmed/31886409 http://dx.doi.org/10.12688/wellcomeopenres.15090.2 Text en Copyright: © 2019 Wright CF et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Open Letter
Wright, Caroline F.
Ware, James S.
Lucassen, Anneke M.
Hall, Alison
Middleton, Anna
Rahman, Nazneen
Ellard, Sian
Firth, Helen V.
Genomic variant sharing: a position statement
title Genomic variant sharing: a position statement
title_full Genomic variant sharing: a position statement
title_fullStr Genomic variant sharing: a position statement
title_full_unstemmed Genomic variant sharing: a position statement
title_short Genomic variant sharing: a position statement
title_sort genomic variant sharing: a position statement
topic Open Letter
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913213/
https://www.ncbi.nlm.nih.gov/pubmed/31886409
http://dx.doi.org/10.12688/wellcomeopenres.15090.2
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