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Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods
OBJECTIVE: This study focuses on the task of automatically assigning standardized (topical) subject headings to free-text sentences in clinical nursing notes. The underlying motivation is to support nurses when they document patient care by developing a computer system that can assist in incorporati...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913232/ https://www.ncbi.nlm.nih.gov/pubmed/31605490 http://dx.doi.org/10.1093/jamia/ocz150 |
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author | Moen, Hans Hakala, Kai Peltonen, Laura-Maria Suhonen, Henry Ginter, Filip Salakoski, Tapio Salanterä, Sanna |
author_facet | Moen, Hans Hakala, Kai Peltonen, Laura-Maria Suhonen, Henry Ginter, Filip Salakoski, Tapio Salanterä, Sanna |
author_sort | Moen, Hans |
collection | PubMed |
description | OBJECTIVE: This study focuses on the task of automatically assigning standardized (topical) subject headings to free-text sentences in clinical nursing notes. The underlying motivation is to support nurses when they document patient care by developing a computer system that can assist in incorporating suitable subject headings that reflect the documented topics. Central in this study is performance evaluation of several text classification methods to assess the feasibility of developing such a system. MATERIALS AND METHODS: Seven text classification methods are evaluated using a corpus of approximately 0.5 million nursing notes (5.5 million sentences) with 676 unique headings extracted from a Finnish university hospital. Several of these methods are based on artificial neural networks. Evaluation is first done in an automatic manner for all methods, then a manual error analysis is done on a sample. RESULTS: We find that a method based on a bidirectional long short-term memory network performs best with an average recall of 0.5435 when allowed to suggest 1 subject heading per sentence and 0.8954 when allowed to suggest 10 subject headings per sentence. However, other methods achieve comparable results. The manual analysis indicates that the predictions are better than what the automatic evaluation suggests. CONCLUSIONS: The results indicate that several of the tested methods perform well in suggesting the most appropriate subject headings on sentence level. Thus, we find it feasible to develop a text classification system that can support the use of standardized terminologies and save nurses time and effort on care documentation. |
format | Online Article Text |
id | pubmed-6913232 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-69132322019-12-19 Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods Moen, Hans Hakala, Kai Peltonen, Laura-Maria Suhonen, Henry Ginter, Filip Salakoski, Tapio Salanterä, Sanna J Am Med Inform Assoc Research and Applications OBJECTIVE: This study focuses on the task of automatically assigning standardized (topical) subject headings to free-text sentences in clinical nursing notes. The underlying motivation is to support nurses when they document patient care by developing a computer system that can assist in incorporating suitable subject headings that reflect the documented topics. Central in this study is performance evaluation of several text classification methods to assess the feasibility of developing such a system. MATERIALS AND METHODS: Seven text classification methods are evaluated using a corpus of approximately 0.5 million nursing notes (5.5 million sentences) with 676 unique headings extracted from a Finnish university hospital. Several of these methods are based on artificial neural networks. Evaluation is first done in an automatic manner for all methods, then a manual error analysis is done on a sample. RESULTS: We find that a method based on a bidirectional long short-term memory network performs best with an average recall of 0.5435 when allowed to suggest 1 subject heading per sentence and 0.8954 when allowed to suggest 10 subject headings per sentence. However, other methods achieve comparable results. The manual analysis indicates that the predictions are better than what the automatic evaluation suggests. CONCLUSIONS: The results indicate that several of the tested methods perform well in suggesting the most appropriate subject headings on sentence level. Thus, we find it feasible to develop a text classification system that can support the use of standardized terminologies and save nurses time and effort on care documentation. Oxford University Press 2019-10-12 /pmc/articles/PMC6913232/ /pubmed/31605490 http://dx.doi.org/10.1093/jamia/ocz150 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of the American Medical Informatics Association. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Research and Applications Moen, Hans Hakala, Kai Peltonen, Laura-Maria Suhonen, Henry Ginter, Filip Salakoski, Tapio Salanterä, Sanna Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods |
title | Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods |
title_full | Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods |
title_fullStr | Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods |
title_full_unstemmed | Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods |
title_short | Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods |
title_sort | supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods |
topic | Research and Applications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913232/ https://www.ncbi.nlm.nih.gov/pubmed/31605490 http://dx.doi.org/10.1093/jamia/ocz150 |
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