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Prognostic genes in the tumor microenvironment in cervical squamous cell carcinoma

Cervical squamous cell carcinoma (CSCC) is one of the most commonly occurring gynecological malignancies. Because CSCC is a biologically heterogeneous disease, its prognosis varies. Therefore, identifying prognostic biomarkers that reflect its biological heterogeneity could lead to better interventi...

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Autores principales: Pan, Xin-Bin, Lu, Yan, Huang, Jian-Li, Long, Ying, Yao, De-Sheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6914434/
https://www.ncbi.nlm.nih.gov/pubmed/31740624
http://dx.doi.org/10.18632/aging.102429
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author Pan, Xin-Bin
Lu, Yan
Huang, Jian-Li
Long, Ying
Yao, De-Sheng
author_facet Pan, Xin-Bin
Lu, Yan
Huang, Jian-Li
Long, Ying
Yao, De-Sheng
author_sort Pan, Xin-Bin
collection PubMed
description Cervical squamous cell carcinoma (CSCC) is one of the most commonly occurring gynecological malignancies. Because CSCC is a biologically heterogeneous disease, its prognosis varies. Therefore, identifying prognostic biomarkers that reflect its biological heterogeneity could lead to better interventions for patients with a poor prognosis. This study used the ESTIMATE algorithm to identify immune related prognostic genes within the tumor microenvironment of CSCC. The results revealed that high immune scores were associated with better overall survival (P = 0.029). Differential expression analysis revealed 384 intersection genes influencing both the immune and stromal scores. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses showed the 384 intersection genes to be mainly enriched for T cell activation, the region of the membrane, carbohydrate binding, and cytokine-cytokine receptor interaction. Among them, 149 immune genes were predictive of overall survival in CSCC. These findings provide a more comprehensive understanding of immune genes within the tumor microenvironment as well as a list of immune genes prognostic in CSCC.
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spelling pubmed-69144342019-12-19 Prognostic genes in the tumor microenvironment in cervical squamous cell carcinoma Pan, Xin-Bin Lu, Yan Huang, Jian-Li Long, Ying Yao, De-Sheng Aging (Albany NY) Research Paper Cervical squamous cell carcinoma (CSCC) is one of the most commonly occurring gynecological malignancies. Because CSCC is a biologically heterogeneous disease, its prognosis varies. Therefore, identifying prognostic biomarkers that reflect its biological heterogeneity could lead to better interventions for patients with a poor prognosis. This study used the ESTIMATE algorithm to identify immune related prognostic genes within the tumor microenvironment of CSCC. The results revealed that high immune scores were associated with better overall survival (P = 0.029). Differential expression analysis revealed 384 intersection genes influencing both the immune and stromal scores. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses showed the 384 intersection genes to be mainly enriched for T cell activation, the region of the membrane, carbohydrate binding, and cytokine-cytokine receptor interaction. Among them, 149 immune genes were predictive of overall survival in CSCC. These findings provide a more comprehensive understanding of immune genes within the tumor microenvironment as well as a list of immune genes prognostic in CSCC. Impact Journals 2019-11-18 /pmc/articles/PMC6914434/ /pubmed/31740624 http://dx.doi.org/10.18632/aging.102429 Text en Copyright © 2019 Pan et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Pan, Xin-Bin
Lu, Yan
Huang, Jian-Li
Long, Ying
Yao, De-Sheng
Prognostic genes in the tumor microenvironment in cervical squamous cell carcinoma
title Prognostic genes in the tumor microenvironment in cervical squamous cell carcinoma
title_full Prognostic genes in the tumor microenvironment in cervical squamous cell carcinoma
title_fullStr Prognostic genes in the tumor microenvironment in cervical squamous cell carcinoma
title_full_unstemmed Prognostic genes in the tumor microenvironment in cervical squamous cell carcinoma
title_short Prognostic genes in the tumor microenvironment in cervical squamous cell carcinoma
title_sort prognostic genes in the tumor microenvironment in cervical squamous cell carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6914434/
https://www.ncbi.nlm.nih.gov/pubmed/31740624
http://dx.doi.org/10.18632/aging.102429
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