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X-ray microtomography and linear discriminant analysis enable detection of embolism-related acoustic emissions
BACKGROUND: Acoustic emission (AE) sensing is in use since the late 1960s in drought-induced embolism research as a non-invasive and continuous method. It is very well suited to assess a plant’s vulnerability to dehydration. Over the last couple of years, AE sensing has further improved due to progr...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6916244/ https://www.ncbi.nlm.nih.gov/pubmed/31889977 http://dx.doi.org/10.1186/s13007-019-0543-4 |
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author | De Baerdemaeker, Niels J. F. Stock, Michiel Van den Bulcke, Jan De Baets, Bernard Van Hoorebeke, Luc Steppe, Kathy |
author_facet | De Baerdemaeker, Niels J. F. Stock, Michiel Van den Bulcke, Jan De Baets, Bernard Van Hoorebeke, Luc Steppe, Kathy |
author_sort | De Baerdemaeker, Niels J. F. |
collection | PubMed |
description | BACKGROUND: Acoustic emission (AE) sensing is in use since the late 1960s in drought-induced embolism research as a non-invasive and continuous method. It is very well suited to assess a plant’s vulnerability to dehydration. Over the last couple of years, AE sensing has further improved due to progress in AE sensors, data acquisition methods and analysis systems. Despite these recent advances, it is still challenging to detect drought-induced embolism events in the AE sources registered by the sensors during dehydration, which sometimes questions the quantitative potential of AE sensing. RESULTS: In quest of a method to separate embolism-related AE signals from other dehydration-related signals, a 2-year-old potted Fraxinus excelsior L. tree was subjected to a drought experiment. Embolism formation was acoustically measured with two broadband point-contact AE sensors while simultaneously being visualized by X-ray computed microtomography (µCT). A machine learning method was used to link visually detected embolism formation by µCT with corresponding AE signals. Specifically, applying linear discriminant analysis (LDA) on the six AE waveform parameters amplitude, counts, duration, signal strength, absolute energy and partial power in the range 100–200 kHz resulted in an embolism-related acoustic vulnerability curve (VC(AE-E)) better resembling the standard µCT VC (VC(CT)), both in time and in absolute number of embolized vessels. Interestingly, the unfiltered acoustic vulnerability curve (VC(AE)) also closely resembled VC(CT), indicating that VCs constructed from all registered AE signals did not compromise the quantitative interpretation of the species’ vulnerability to drought-induced embolism formation. CONCLUSION: Although machine learning could detect similar numbers of embolism-related AE as µCT, there still is insufficient model-based evidence to conclusively attribute these signals to embolism events. Future research should therefore focus on similar experiments with more in-depth analysis of acoustic waveforms, as well as explore the possibility of Fast Fourier transformation (FFT) to remove non-embolism-related AE signals. |
format | Online Article Text |
id | pubmed-6916244 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-69162442019-12-30 X-ray microtomography and linear discriminant analysis enable detection of embolism-related acoustic emissions De Baerdemaeker, Niels J. F. Stock, Michiel Van den Bulcke, Jan De Baets, Bernard Van Hoorebeke, Luc Steppe, Kathy Plant Methods Research BACKGROUND: Acoustic emission (AE) sensing is in use since the late 1960s in drought-induced embolism research as a non-invasive and continuous method. It is very well suited to assess a plant’s vulnerability to dehydration. Over the last couple of years, AE sensing has further improved due to progress in AE sensors, data acquisition methods and analysis systems. Despite these recent advances, it is still challenging to detect drought-induced embolism events in the AE sources registered by the sensors during dehydration, which sometimes questions the quantitative potential of AE sensing. RESULTS: In quest of a method to separate embolism-related AE signals from other dehydration-related signals, a 2-year-old potted Fraxinus excelsior L. tree was subjected to a drought experiment. Embolism formation was acoustically measured with two broadband point-contact AE sensors while simultaneously being visualized by X-ray computed microtomography (µCT). A machine learning method was used to link visually detected embolism formation by µCT with corresponding AE signals. Specifically, applying linear discriminant analysis (LDA) on the six AE waveform parameters amplitude, counts, duration, signal strength, absolute energy and partial power in the range 100–200 kHz resulted in an embolism-related acoustic vulnerability curve (VC(AE-E)) better resembling the standard µCT VC (VC(CT)), both in time and in absolute number of embolized vessels. Interestingly, the unfiltered acoustic vulnerability curve (VC(AE)) also closely resembled VC(CT), indicating that VCs constructed from all registered AE signals did not compromise the quantitative interpretation of the species’ vulnerability to drought-induced embolism formation. CONCLUSION: Although machine learning could detect similar numbers of embolism-related AE as µCT, there still is insufficient model-based evidence to conclusively attribute these signals to embolism events. Future research should therefore focus on similar experiments with more in-depth analysis of acoustic waveforms, as well as explore the possibility of Fast Fourier transformation (FFT) to remove non-embolism-related AE signals. BioMed Central 2019-12-17 /pmc/articles/PMC6916244/ /pubmed/31889977 http://dx.doi.org/10.1186/s13007-019-0543-4 Text en © The Author(s) 2019 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research De Baerdemaeker, Niels J. F. Stock, Michiel Van den Bulcke, Jan De Baets, Bernard Van Hoorebeke, Luc Steppe, Kathy X-ray microtomography and linear discriminant analysis enable detection of embolism-related acoustic emissions |
title | X-ray microtomography and linear discriminant analysis enable detection of embolism-related acoustic emissions |
title_full | X-ray microtomography and linear discriminant analysis enable detection of embolism-related acoustic emissions |
title_fullStr | X-ray microtomography and linear discriminant analysis enable detection of embolism-related acoustic emissions |
title_full_unstemmed | X-ray microtomography and linear discriminant analysis enable detection of embolism-related acoustic emissions |
title_short | X-ray microtomography and linear discriminant analysis enable detection of embolism-related acoustic emissions |
title_sort | x-ray microtomography and linear discriminant analysis enable detection of embolism-related acoustic emissions |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6916244/ https://www.ncbi.nlm.nih.gov/pubmed/31889977 http://dx.doi.org/10.1186/s13007-019-0543-4 |
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