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Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application

There has been an exponential growth in the performance and output of sequencing technologies (omics data) with full genome sequencing now producing gigabases of reads on a daily basis. These data may hold the promise of personalized medicine, leading to routinely available sequencing tests that can...

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Detalles Bibliográficos
Autores principales: Lightbody, Gaye, Haberland, Valeriia, Browne, Fiona, Taggart, Laura, Zheng, Huiru, Parkes, Eileen, Blayney, Jaine K
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6917217/
https://www.ncbi.nlm.nih.gov/pubmed/30084865
http://dx.doi.org/10.1093/bib/bby051
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author Lightbody, Gaye
Haberland, Valeriia
Browne, Fiona
Taggart, Laura
Zheng, Huiru
Parkes, Eileen
Blayney, Jaine K
author_facet Lightbody, Gaye
Haberland, Valeriia
Browne, Fiona
Taggart, Laura
Zheng, Huiru
Parkes, Eileen
Blayney, Jaine K
author_sort Lightbody, Gaye
collection PubMed
description There has been an exponential growth in the performance and output of sequencing technologies (omics data) with full genome sequencing now producing gigabases of reads on a daily basis. These data may hold the promise of personalized medicine, leading to routinely available sequencing tests that can guide patient treatment decisions. In the era of high-throughput sequencing (HTS), computational considerations, data governance and clinical translation are the greatest rate-limiting steps. To ensure that the analysis, management and interpretation of such extensive omics data is exploited to its full potential, key factors, including sample sourcing, technology selection and computational expertise and resources, need to be considered, leading to an integrated set of high-performance tools and systems. This article provides an up-to-date overview of the evolution of HTS and the accompanying tools, infrastructure and data management approaches that are emerging in this space, which, if used within in a multidisciplinary context, may ultimately facilitate the development of personalized medicine.
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spelling pubmed-69172172019-12-20 Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application Lightbody, Gaye Haberland, Valeriia Browne, Fiona Taggart, Laura Zheng, Huiru Parkes, Eileen Blayney, Jaine K Brief Bioinform Review Articles There has been an exponential growth in the performance and output of sequencing technologies (omics data) with full genome sequencing now producing gigabases of reads on a daily basis. These data may hold the promise of personalized medicine, leading to routinely available sequencing tests that can guide patient treatment decisions. In the era of high-throughput sequencing (HTS), computational considerations, data governance and clinical translation are the greatest rate-limiting steps. To ensure that the analysis, management and interpretation of such extensive omics data is exploited to its full potential, key factors, including sample sourcing, technology selection and computational expertise and resources, need to be considered, leading to an integrated set of high-performance tools and systems. This article provides an up-to-date overview of the evolution of HTS and the accompanying tools, infrastructure and data management approaches that are emerging in this space, which, if used within in a multidisciplinary context, may ultimately facilitate the development of personalized medicine. Oxford University Press 2019-06-14 /pmc/articles/PMC6917217/ /pubmed/30084865 http://dx.doi.org/10.1093/bib/bby051 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review Articles
Lightbody, Gaye
Haberland, Valeriia
Browne, Fiona
Taggart, Laura
Zheng, Huiru
Parkes, Eileen
Blayney, Jaine K
Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application
title Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application
title_full Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application
title_fullStr Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application
title_full_unstemmed Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application
title_short Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application
title_sort review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application
topic Review Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6917217/
https://www.ncbi.nlm.nih.gov/pubmed/30084865
http://dx.doi.org/10.1093/bib/bby051
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