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RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome

The Hippo signaling pathway is a highly conserved pathway controlling organ size, cell proliferation, apoptosis and other biological functions. Recent studies have shown that Hippo signaling pathway also plays important roles in cancer initiation and progression. However, a database offering multi-o...

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Autores principales: Wang, Chengyu, Yang, Fan, Chen, Tingting, Dong, Qi, Zhao, Zhangxiang, Liu, Yaoyao, Chen, Bo, Liang, Haihai, Yang, Huike, Gu, Yunyan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6917511/
https://www.ncbi.nlm.nih.gov/pubmed/31848596
http://dx.doi.org/10.1093/database/baz135
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author Wang, Chengyu
Yang, Fan
Chen, Tingting
Dong, Qi
Zhao, Zhangxiang
Liu, Yaoyao
Chen, Bo
Liang, Haihai
Yang, Huike
Gu, Yunyan
author_facet Wang, Chengyu
Yang, Fan
Chen, Tingting
Dong, Qi
Zhao, Zhangxiang
Liu, Yaoyao
Chen, Bo
Liang, Haihai
Yang, Huike
Gu, Yunyan
author_sort Wang, Chengyu
collection PubMed
description The Hippo signaling pathway is a highly conserved pathway controlling organ size, cell proliferation, apoptosis and other biological functions. Recent studies have shown that Hippo signaling pathway also plays important roles in cancer initiation and progression. However, a database offering multi-omics analyses and visualization of Hippo pathway genes in cancer, as well as comprehensive Hippo regulatory relationships is still lacking. To fill this gap, we constructed the Regulation of the Hippo Pathway in Cancer Genome (RHPCG) database. Currently, RHPCG focuses on analyzing the 21 core Hippo-protein-encoding genes in over 10 000 patients across 33 TCGA (The Cancer Genome Atlas) cancer types at the levels of genomic, epigenomic and transcriptomic landscape. Concurrently, RHPCG provides in its motif section 11 regulatory motif types associated with 21 core Hippo pathway genes containing 180 miRNAs, 6182 lncRNAs, 728 circRNAs and 335 protein coding genes. Thus, RHPCG is a powerful tool that could help researchers understand gene alterations and regulatory mechanisms in the Hippo signaling pathway in cancer.
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spelling pubmed-69175112019-12-20 RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome Wang, Chengyu Yang, Fan Chen, Tingting Dong, Qi Zhao, Zhangxiang Liu, Yaoyao Chen, Bo Liang, Haihai Yang, Huike Gu, Yunyan Database (Oxford) Original Article The Hippo signaling pathway is a highly conserved pathway controlling organ size, cell proliferation, apoptosis and other biological functions. Recent studies have shown that Hippo signaling pathway also plays important roles in cancer initiation and progression. However, a database offering multi-omics analyses and visualization of Hippo pathway genes in cancer, as well as comprehensive Hippo regulatory relationships is still lacking. To fill this gap, we constructed the Regulation of the Hippo Pathway in Cancer Genome (RHPCG) database. Currently, RHPCG focuses on analyzing the 21 core Hippo-protein-encoding genes in over 10 000 patients across 33 TCGA (The Cancer Genome Atlas) cancer types at the levels of genomic, epigenomic and transcriptomic landscape. Concurrently, RHPCG provides in its motif section 11 regulatory motif types associated with 21 core Hippo pathway genes containing 180 miRNAs, 6182 lncRNAs, 728 circRNAs and 335 protein coding genes. Thus, RHPCG is a powerful tool that could help researchers understand gene alterations and regulatory mechanisms in the Hippo signaling pathway in cancer. Oxford University Press 2019-12-17 /pmc/articles/PMC6917511/ /pubmed/31848596 http://dx.doi.org/10.1093/database/baz135 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Wang, Chengyu
Yang, Fan
Chen, Tingting
Dong, Qi
Zhao, Zhangxiang
Liu, Yaoyao
Chen, Bo
Liang, Haihai
Yang, Huike
Gu, Yunyan
RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome
title RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome
title_full RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome
title_fullStr RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome
title_full_unstemmed RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome
title_short RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome
title_sort rhpcg: a database of the regulation of the hippo pathway in cancer genome
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6917511/
https://www.ncbi.nlm.nih.gov/pubmed/31848596
http://dx.doi.org/10.1093/database/baz135
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