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Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology
Recent advances in label-free virtual histology promise a new era for real-time molecular diagnosis in the operating room and during biopsy procedures. To take full advantage of the rich, multidimensional information provided by these technologies, reproducible and reliable computational tools that...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6917773/ https://www.ncbi.nlm.nih.gov/pubmed/31872065 http://dx.doi.org/10.1038/s41698-019-0104-3 |
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author | You, Sixian Sun, Yi Yang, Lin Park, Jaena Tu, Haohua Marjanovic, Marina Sinha, Saurabh Boppart, Stephen A. |
author_facet | You, Sixian Sun, Yi Yang, Lin Park, Jaena Tu, Haohua Marjanovic, Marina Sinha, Saurabh Boppart, Stephen A. |
author_sort | You, Sixian |
collection | PubMed |
description | Recent advances in label-free virtual histology promise a new era for real-time molecular diagnosis in the operating room and during biopsy procedures. To take full advantage of the rich, multidimensional information provided by these technologies, reproducible and reliable computational tools that could facilitate the diagnosis are in great demand. In this study, we developed a deep-learning-based framework to recognize cancer versus normal human breast tissue from real-time label-free virtual histology images, with a tile-level AUC (area under receiver operating curve) of 95% and slide-level AUC of 100% on unseen samples. Furthermore, models trained on a high-quality laboratory-generated dataset can generalize to independent datasets acquired from a portable intraoperative version of the imaging technology with a physics-based adapted design. Classification activation maps and final feature visualization revealed discriminative patterns, such as tumor cells and tumor-associated vesicles, that are highly associated with cancer status. These results demonstrate that through the combination of real-time virtual histopathology and a deep-learning framework, accurate real-time diagnosis could be achieved in point-of-procedure clinical applications. |
format | Online Article Text |
id | pubmed-6917773 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-69177732019-12-23 Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology You, Sixian Sun, Yi Yang, Lin Park, Jaena Tu, Haohua Marjanovic, Marina Sinha, Saurabh Boppart, Stephen A. NPJ Precis Oncol Article Recent advances in label-free virtual histology promise a new era for real-time molecular diagnosis in the operating room and during biopsy procedures. To take full advantage of the rich, multidimensional information provided by these technologies, reproducible and reliable computational tools that could facilitate the diagnosis are in great demand. In this study, we developed a deep-learning-based framework to recognize cancer versus normal human breast tissue from real-time label-free virtual histology images, with a tile-level AUC (area under receiver operating curve) of 95% and slide-level AUC of 100% on unseen samples. Furthermore, models trained on a high-quality laboratory-generated dataset can generalize to independent datasets acquired from a portable intraoperative version of the imaging technology with a physics-based adapted design. Classification activation maps and final feature visualization revealed discriminative patterns, such as tumor cells and tumor-associated vesicles, that are highly associated with cancer status. These results demonstrate that through the combination of real-time virtual histopathology and a deep-learning framework, accurate real-time diagnosis could be achieved in point-of-procedure clinical applications. Nature Publishing Group UK 2019-12-17 /pmc/articles/PMC6917773/ /pubmed/31872065 http://dx.doi.org/10.1038/s41698-019-0104-3 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article You, Sixian Sun, Yi Yang, Lin Park, Jaena Tu, Haohua Marjanovic, Marina Sinha, Saurabh Boppart, Stephen A. Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology |
title | Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology |
title_full | Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology |
title_fullStr | Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology |
title_full_unstemmed | Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology |
title_short | Real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology |
title_sort | real-time intraoperative diagnosis by deep neural network driven multiphoton virtual histology |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6917773/ https://www.ncbi.nlm.nih.gov/pubmed/31872065 http://dx.doi.org/10.1038/s41698-019-0104-3 |
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