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Two-dimensional infrared spectroscopic study of cytochrome c peroxidase activity in deep eutectic solvent
Deep eutectic solvents (DESs) prepared by mixing hydrogen-bond donor and acceptor molecules have been found to be of use in several applications. Recently, it was shown that DESs can enhance the peroxidation activity of cytochrome c. Here, to elucidate the effects of DESs on the peroxidase activity...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Crystallographic Association
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920052/ https://www.ncbi.nlm.nih.gov/pubmed/31867407 http://dx.doi.org/10.1063/1.5130940 |
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author | Osawa, Koji Kossowska, Dorota Park, Kwanghee Kwak, Kyungwon Cho, Minhaeng |
author_facet | Osawa, Koji Kossowska, Dorota Park, Kwanghee Kwak, Kyungwon Cho, Minhaeng |
author_sort | Osawa, Koji |
collection | PubMed |
description | Deep eutectic solvents (DESs) prepared by mixing hydrogen-bond donor and acceptor molecules have been found to be of use in several applications. Recently, it was shown that DESs can enhance the peroxidation activity of cytochrome c. Here, to elucidate the effects of DESs on the peroxidase activity of cytochrome c, we carried out linear and nonlinear infrared spectroscopic studies of the CO stretch mode of carbon monoxide cytochrome c (COCytc) in ethylammonium chloride (EAC)/urea DES. The FTIR spectrum of COCytc shows a significant spectral shift upon addition of the DES. The broadening and red-shifting of the CO band are observed in both urea and DES solutions, which are induced by the change of the distal ligands around the heme. Although the FTIR study is sensitive to structural changes in the active site, it does not provide quantitative information about structural dynamics related to the catalytic activity itself. Thus, we carried out two-dimensional IR spectroscopy of the CO mode, which suggests that there is a different conformer that could be related to the enhanced catalytic activity in DES. In particular, the spectral diffusion dynamics of that conformer exhibits quite different behavior. The experimental results lead us to propose a hypothesis that the DES increases the population of the conformer with distal ligand lysines close to the reaction center through the combining effect of urea and EAC, which results in the enhancement of the peroxidase activity of cytochrome c. We anticipate that the present experimental work stimulates future investigations of the effects of DES on biocatalysis. |
format | Online Article Text |
id | pubmed-6920052 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American Crystallographic Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-69200522019-12-20 Two-dimensional infrared spectroscopic study of cytochrome c peroxidase activity in deep eutectic solvent Osawa, Koji Kossowska, Dorota Park, Kwanghee Kwak, Kyungwon Cho, Minhaeng Struct Dyn ARTICLES Deep eutectic solvents (DESs) prepared by mixing hydrogen-bond donor and acceptor molecules have been found to be of use in several applications. Recently, it was shown that DESs can enhance the peroxidation activity of cytochrome c. Here, to elucidate the effects of DESs on the peroxidase activity of cytochrome c, we carried out linear and nonlinear infrared spectroscopic studies of the CO stretch mode of carbon monoxide cytochrome c (COCytc) in ethylammonium chloride (EAC)/urea DES. The FTIR spectrum of COCytc shows a significant spectral shift upon addition of the DES. The broadening and red-shifting of the CO band are observed in both urea and DES solutions, which are induced by the change of the distal ligands around the heme. Although the FTIR study is sensitive to structural changes in the active site, it does not provide quantitative information about structural dynamics related to the catalytic activity itself. Thus, we carried out two-dimensional IR spectroscopy of the CO mode, which suggests that there is a different conformer that could be related to the enhanced catalytic activity in DES. In particular, the spectral diffusion dynamics of that conformer exhibits quite different behavior. The experimental results lead us to propose a hypothesis that the DES increases the population of the conformer with distal ligand lysines close to the reaction center through the combining effect of urea and EAC, which results in the enhancement of the peroxidase activity of cytochrome c. We anticipate that the present experimental work stimulates future investigations of the effects of DES on biocatalysis. American Crystallographic Association 2019-12-18 /pmc/articles/PMC6920052/ /pubmed/31867407 http://dx.doi.org/10.1063/1.5130940 Text en © 2019 Author(s). 2329-7778/2019/6(6)/064703/8 All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | ARTICLES Osawa, Koji Kossowska, Dorota Park, Kwanghee Kwak, Kyungwon Cho, Minhaeng Two-dimensional infrared spectroscopic study of cytochrome c peroxidase activity in deep eutectic solvent |
title | Two-dimensional infrared spectroscopic study of cytochrome c peroxidase activity in deep eutectic solvent |
title_full | Two-dimensional infrared spectroscopic study of cytochrome c peroxidase activity in deep eutectic solvent |
title_fullStr | Two-dimensional infrared spectroscopic study of cytochrome c peroxidase activity in deep eutectic solvent |
title_full_unstemmed | Two-dimensional infrared spectroscopic study of cytochrome c peroxidase activity in deep eutectic solvent |
title_short | Two-dimensional infrared spectroscopic study of cytochrome c peroxidase activity in deep eutectic solvent |
title_sort | two-dimensional infrared spectroscopic study of cytochrome c peroxidase activity in deep eutectic solvent |
topic | ARTICLES |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920052/ https://www.ncbi.nlm.nih.gov/pubmed/31867407 http://dx.doi.org/10.1063/1.5130940 |
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