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Machine learning models to predict onset of dementia: A label learning approach
INTRODUCTION: The study objective was to build a machine learning model to predict incident mild cognitive impairment, Alzheimer's Disease, and related dementias from structured data using administrative and electronic health record sources. METHODS: A cohort of patients (n = 121,907) and contr...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920083/ https://www.ncbi.nlm.nih.gov/pubmed/31879701 http://dx.doi.org/10.1016/j.trci.2019.10.006 |
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author | Nori, Vijay S. Hane, Christopher A. Crown, William H. Au, Rhoda Burke, William J. Sanghavi, Darshak M. Bleicher, Paul |
author_facet | Nori, Vijay S. Hane, Christopher A. Crown, William H. Au, Rhoda Burke, William J. Sanghavi, Darshak M. Bleicher, Paul |
author_sort | Nori, Vijay S. |
collection | PubMed |
description | INTRODUCTION: The study objective was to build a machine learning model to predict incident mild cognitive impairment, Alzheimer's Disease, and related dementias from structured data using administrative and electronic health record sources. METHODS: A cohort of patients (n = 121,907) and controls (n = 5,307,045) was created for modeling using data within 2 years of patient's incident diagnosis date. Additional cohorts 3–8 years removed from index data are used for prediction. Training cohorts were matched on age, gender, index year, and utilization, and fit with a gradient boosting machine, lightGBM. RESULTS: Incident 2-year model quality on a held-out test set had a sensitivity of 47% and area-under-the-curve of 87%. In the 3-year model, the learned labels achieved 24% (71%), which dropped to 15% (72%) in year 8. DISCUSSION: The ability of the model to discriminate incident cases of dementia implies that it can be a worthwhile tool to screen patients for trial recruitment and patient management. |
format | Online Article Text |
id | pubmed-6920083 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-69200832019-12-26 Machine learning models to predict onset of dementia: A label learning approach Nori, Vijay S. Hane, Christopher A. Crown, William H. Au, Rhoda Burke, William J. Sanghavi, Darshak M. Bleicher, Paul Alzheimers Dement (N Y) Featured Article INTRODUCTION: The study objective was to build a machine learning model to predict incident mild cognitive impairment, Alzheimer's Disease, and related dementias from structured data using administrative and electronic health record sources. METHODS: A cohort of patients (n = 121,907) and controls (n = 5,307,045) was created for modeling using data within 2 years of patient's incident diagnosis date. Additional cohorts 3–8 years removed from index data are used for prediction. Training cohorts were matched on age, gender, index year, and utilization, and fit with a gradient boosting machine, lightGBM. RESULTS: Incident 2-year model quality on a held-out test set had a sensitivity of 47% and area-under-the-curve of 87%. In the 3-year model, the learned labels achieved 24% (71%), which dropped to 15% (72%) in year 8. DISCUSSION: The ability of the model to discriminate incident cases of dementia implies that it can be a worthwhile tool to screen patients for trial recruitment and patient management. Elsevier 2019-12-10 /pmc/articles/PMC6920083/ /pubmed/31879701 http://dx.doi.org/10.1016/j.trci.2019.10.006 Text en © 2019 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Featured Article Nori, Vijay S. Hane, Christopher A. Crown, William H. Au, Rhoda Burke, William J. Sanghavi, Darshak M. Bleicher, Paul Machine learning models to predict onset of dementia: A label learning approach |
title | Machine learning models to predict onset of dementia: A label learning approach |
title_full | Machine learning models to predict onset of dementia: A label learning approach |
title_fullStr | Machine learning models to predict onset of dementia: A label learning approach |
title_full_unstemmed | Machine learning models to predict onset of dementia: A label learning approach |
title_short | Machine learning models to predict onset of dementia: A label learning approach |
title_sort | machine learning models to predict onset of dementia: a label learning approach |
topic | Featured Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920083/ https://www.ncbi.nlm.nih.gov/pubmed/31879701 http://dx.doi.org/10.1016/j.trci.2019.10.006 |
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