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A Long Short-Term Memory neural network for the detection of epileptiform spikes and high frequency oscillations

Over the last two decades, the evidence has been growing that in addition to epileptic spikes high frequency oscillations (HFOs) are important biomarkers of epileptogenic tissue. New methods of artificial intelligence such as deep learning neural networks can provide additional tools for automated a...

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Autores principales: Medvedev, A. V., Agoureeva, G. I., Murro, A. M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920137/
https://www.ncbi.nlm.nih.gov/pubmed/31852929
http://dx.doi.org/10.1038/s41598-019-55861-w
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author Medvedev, A. V.
Agoureeva, G. I.
Murro, A. M.
author_facet Medvedev, A. V.
Agoureeva, G. I.
Murro, A. M.
author_sort Medvedev, A. V.
collection PubMed
description Over the last two decades, the evidence has been growing that in addition to epileptic spikes high frequency oscillations (HFOs) are important biomarkers of epileptogenic tissue. New methods of artificial intelligence such as deep learning neural networks can provide additional tools for automated analysis of EEG. Here we present a Long Short-Term Memory neural network for detection of spikes, ripples and ripples-on-spikes (RonS). We used intracranial EEG (iEEG) from two independent datasets. First dataset (7 patients) was used for network training and testing. The second dataset (5 patients) was used for cross-institutional validation. 1000 events of each class (spike, RonS, ripple and baseline) were selected from the candidates initially found using a novel threshold method. Network training was performed using random selections of 50–500 events (per class) from all patients from the 1(st) dataset. This ‘global’ network was then tested on other events for each patient from both datasets. The network was able to detect events with a good generalisability namely, with total accuracy and specificity for each class exceeding 90% in all cases, and sensitivity less than 86% in only two cases (82.5% for spikes in one patient and 81.9% for ripples in another patient). The deep learning networks can significantly accelerate the analysis of iEEG data and increase their diagnostic value which may improve surgical outcome in patients with localization-related intractable epilepsy.
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spelling pubmed-69201372019-12-19 A Long Short-Term Memory neural network for the detection of epileptiform spikes and high frequency oscillations Medvedev, A. V. Agoureeva, G. I. Murro, A. M. Sci Rep Article Over the last two decades, the evidence has been growing that in addition to epileptic spikes high frequency oscillations (HFOs) are important biomarkers of epileptogenic tissue. New methods of artificial intelligence such as deep learning neural networks can provide additional tools for automated analysis of EEG. Here we present a Long Short-Term Memory neural network for detection of spikes, ripples and ripples-on-spikes (RonS). We used intracranial EEG (iEEG) from two independent datasets. First dataset (7 patients) was used for network training and testing. The second dataset (5 patients) was used for cross-institutional validation. 1000 events of each class (spike, RonS, ripple and baseline) were selected from the candidates initially found using a novel threshold method. Network training was performed using random selections of 50–500 events (per class) from all patients from the 1(st) dataset. This ‘global’ network was then tested on other events for each patient from both datasets. The network was able to detect events with a good generalisability namely, with total accuracy and specificity for each class exceeding 90% in all cases, and sensitivity less than 86% in only two cases (82.5% for spikes in one patient and 81.9% for ripples in another patient). The deep learning networks can significantly accelerate the analysis of iEEG data and increase their diagnostic value which may improve surgical outcome in patients with localization-related intractable epilepsy. Nature Publishing Group UK 2019-12-18 /pmc/articles/PMC6920137/ /pubmed/31852929 http://dx.doi.org/10.1038/s41598-019-55861-w Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Medvedev, A. V.
Agoureeva, G. I.
Murro, A. M.
A Long Short-Term Memory neural network for the detection of epileptiform spikes and high frequency oscillations
title A Long Short-Term Memory neural network for the detection of epileptiform spikes and high frequency oscillations
title_full A Long Short-Term Memory neural network for the detection of epileptiform spikes and high frequency oscillations
title_fullStr A Long Short-Term Memory neural network for the detection of epileptiform spikes and high frequency oscillations
title_full_unstemmed A Long Short-Term Memory neural network for the detection of epileptiform spikes and high frequency oscillations
title_short A Long Short-Term Memory neural network for the detection of epileptiform spikes and high frequency oscillations
title_sort long short-term memory neural network for the detection of epileptiform spikes and high frequency oscillations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920137/
https://www.ncbi.nlm.nih.gov/pubmed/31852929
http://dx.doi.org/10.1038/s41598-019-55861-w
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