Cargando…
Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic)
Antarctica holds about 70% of all the freshwater on the planet in the form of ice. The seawater, it chills, affect the currents and temperature everywhere. Global warming risks the melting of the icecaps as it has already increased the ocean temperature by 1 °C to the West Antarctic peninsula since...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920468/ https://www.ncbi.nlm.nih.gov/pubmed/31886343 http://dx.doi.org/10.1016/j.dib.2019.104876 |
_version_ | 1783480962375483392 |
---|---|
author | Sadaiappan, Balamurugan Kannan, Sivakumar Palaniappan, Sivasankar Manikkam, Radhakrishnan Ramasamy, Balagurunathan Anilkumar N. Subramanian, Mahendran |
author_facet | Sadaiappan, Balamurugan Kannan, Sivakumar Palaniappan, Sivasankar Manikkam, Radhakrishnan Ramasamy, Balagurunathan Anilkumar N. Subramanian, Mahendran |
author_sort | Sadaiappan, Balamurugan |
collection | PubMed |
description | Antarctica holds about 70% of all the freshwater on the planet in the form of ice. The seawater, it chills, affect the currents and temperature everywhere. Global warming risks the melting of the icecaps as it has already increased the ocean temperature by 1 °C to the West Antarctic peninsula since 1955. A better understanding of the microbial community in this extreme environment of utmost importance is of interest to the scientific community. Herein, we document our metagenomics analysis of the microbial diversity and abundance in the Southern Ocean [Lat 55″ 33′ 396 S; Lon 55″ 31′ 448 E] using Next Generation Sequencing (NGS), QIIME 1.9.1, Silvangs and a naïve Bayesian classifier. Such metagenomics data hold the potential to aid predictive analysis, which is critical to our understanding of the dynamics of the microbial communities and their role in the Southern Ocean at present and in the future. |
format | Online Article Text |
id | pubmed-6920468 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-69204682019-12-27 Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic) Sadaiappan, Balamurugan Kannan, Sivakumar Palaniappan, Sivasankar Manikkam, Radhakrishnan Ramasamy, Balagurunathan Anilkumar N. Subramanian, Mahendran Data Brief Computer Science Antarctica holds about 70% of all the freshwater on the planet in the form of ice. The seawater, it chills, affect the currents and temperature everywhere. Global warming risks the melting of the icecaps as it has already increased the ocean temperature by 1 °C to the West Antarctic peninsula since 1955. A better understanding of the microbial community in this extreme environment of utmost importance is of interest to the scientific community. Herein, we document our metagenomics analysis of the microbial diversity and abundance in the Southern Ocean [Lat 55″ 33′ 396 S; Lon 55″ 31′ 448 E] using Next Generation Sequencing (NGS), QIIME 1.9.1, Silvangs and a naïve Bayesian classifier. Such metagenomics data hold the potential to aid predictive analysis, which is critical to our understanding of the dynamics of the microbial communities and their role in the Southern Ocean at present and in the future. Elsevier 2019-11-23 /pmc/articles/PMC6920468/ /pubmed/31886343 http://dx.doi.org/10.1016/j.dib.2019.104876 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Computer Science Sadaiappan, Balamurugan Kannan, Sivakumar Palaniappan, Sivasankar Manikkam, Radhakrishnan Ramasamy, Balagurunathan Anilkumar N. Subramanian, Mahendran Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic) |
title | Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic) |
title_full | Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic) |
title_fullStr | Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic) |
title_full_unstemmed | Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic) |
title_short | Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic) |
title_sort | metagenomic 16s rdna amplicon data of microbial diversity and its predicted metabolic functions in the southern ocean (antarctic) |
topic | Computer Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920468/ https://www.ncbi.nlm.nih.gov/pubmed/31886343 http://dx.doi.org/10.1016/j.dib.2019.104876 |
work_keys_str_mv | AT sadaiappanbalamurugan metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic AT kannansivakumar metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic AT palaniappansivasankar metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic AT manikkamradhakrishnan metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic AT ramasamybalagurunathan metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic AT anilkumarn metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic AT subramanianmahendran metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic |