Cargando…

Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic)

Antarctica holds about 70% of all the freshwater on the planet in the form of ice. The seawater, it chills, affect the currents and temperature everywhere. Global warming risks the melting of the icecaps as it has already increased the ocean temperature by 1 °C to the West Antarctic peninsula since...

Descripción completa

Detalles Bibliográficos
Autores principales: Sadaiappan, Balamurugan, Kannan, Sivakumar, Palaniappan, Sivasankar, Manikkam, Radhakrishnan, Ramasamy, Balagurunathan, Anilkumar N., Subramanian, Mahendran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920468/
https://www.ncbi.nlm.nih.gov/pubmed/31886343
http://dx.doi.org/10.1016/j.dib.2019.104876
_version_ 1783480962375483392
author Sadaiappan, Balamurugan
Kannan, Sivakumar
Palaniappan, Sivasankar
Manikkam, Radhakrishnan
Ramasamy, Balagurunathan
Anilkumar N.
Subramanian, Mahendran
author_facet Sadaiappan, Balamurugan
Kannan, Sivakumar
Palaniappan, Sivasankar
Manikkam, Radhakrishnan
Ramasamy, Balagurunathan
Anilkumar N.
Subramanian, Mahendran
author_sort Sadaiappan, Balamurugan
collection PubMed
description Antarctica holds about 70% of all the freshwater on the planet in the form of ice. The seawater, it chills, affect the currents and temperature everywhere. Global warming risks the melting of the icecaps as it has already increased the ocean temperature by 1 °C to the West Antarctic peninsula since 1955. A better understanding of the microbial community in this extreme environment of utmost importance is of interest to the scientific community. Herein, we document our metagenomics analysis of the microbial diversity and abundance in the Southern Ocean [Lat 55″ 33′ 396 S; Lon 55″ 31′ 448 E] using Next Generation Sequencing (NGS), QIIME 1.9.1, Silvangs and a naïve Bayesian classifier. Such metagenomics data hold the potential to aid predictive analysis, which is critical to our understanding of the dynamics of the microbial communities and their role in the Southern Ocean at present and in the future.
format Online
Article
Text
id pubmed-6920468
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-69204682019-12-27 Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic) Sadaiappan, Balamurugan Kannan, Sivakumar Palaniappan, Sivasankar Manikkam, Radhakrishnan Ramasamy, Balagurunathan Anilkumar N. Subramanian, Mahendran Data Brief Computer Science Antarctica holds about 70% of all the freshwater on the planet in the form of ice. The seawater, it chills, affect the currents and temperature everywhere. Global warming risks the melting of the icecaps as it has already increased the ocean temperature by 1 °C to the West Antarctic peninsula since 1955. A better understanding of the microbial community in this extreme environment of utmost importance is of interest to the scientific community. Herein, we document our metagenomics analysis of the microbial diversity and abundance in the Southern Ocean [Lat 55″ 33′ 396 S; Lon 55″ 31′ 448 E] using Next Generation Sequencing (NGS), QIIME 1.9.1, Silvangs and a naïve Bayesian classifier. Such metagenomics data hold the potential to aid predictive analysis, which is critical to our understanding of the dynamics of the microbial communities and their role in the Southern Ocean at present and in the future. Elsevier 2019-11-23 /pmc/articles/PMC6920468/ /pubmed/31886343 http://dx.doi.org/10.1016/j.dib.2019.104876 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Computer Science
Sadaiappan, Balamurugan
Kannan, Sivakumar
Palaniappan, Sivasankar
Manikkam, Radhakrishnan
Ramasamy, Balagurunathan
Anilkumar N.
Subramanian, Mahendran
Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic)
title Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic)
title_full Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic)
title_fullStr Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic)
title_full_unstemmed Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic)
title_short Metagenomic 16S rDNA amplicon data of microbial diversity and its predicted metabolic functions in the Southern Ocean (Antarctic)
title_sort metagenomic 16s rdna amplicon data of microbial diversity and its predicted metabolic functions in the southern ocean (antarctic)
topic Computer Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920468/
https://www.ncbi.nlm.nih.gov/pubmed/31886343
http://dx.doi.org/10.1016/j.dib.2019.104876
work_keys_str_mv AT sadaiappanbalamurugan metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic
AT kannansivakumar metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic
AT palaniappansivasankar metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic
AT manikkamradhakrishnan metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic
AT ramasamybalagurunathan metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic
AT anilkumarn metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic
AT subramanianmahendran metagenomic16srdnaamplicondataofmicrobialdiversityanditspredictedmetabolicfunctionsinthesouthernoceanantarctic