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Soil metagenome datasets underneath the Arecibo Observatory reflector dish
The Arecibo Observatory (AO) located in Arecibo, Puerto Rico, is the most sensitive, powerful and active planetary radar system in the world [1]. One of its principal components is the 305 m-diameter spherical reflector dish (AORD), which is exposed to high frequency electromagnetic waves. To unrave...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920479/ https://www.ncbi.nlm.nih.gov/pubmed/31886328 http://dx.doi.org/10.1016/j.dib.2019.104710 |
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author | Rodriguez-Reyes, Miguel G. Rios-Velazquez, Carlos |
author_facet | Rodriguez-Reyes, Miguel G. Rios-Velazquez, Carlos |
author_sort | Rodriguez-Reyes, Miguel G. |
collection | PubMed |
description | The Arecibo Observatory (AO) located in Arecibo, Puerto Rico, is the most sensitive, powerful and active planetary radar system in the world [1]. One of its principal components is the 305 m-diameter spherical reflector dish (AORD), which is exposed to high frequency electromagnetic waves. To unravel the microbial communities that inhabit this environment, soil samples from underneath the AORD were collected, DNA extracted, and sequenced using Illumina MiSeq. Taxonomic and functional profiles were generated using the MG-RAST server. The most abundant domain was Bacteria (91%), followed by Virus (8%), Archaea (0.9%) and Eukaryota (0.9%). The most abundant phylum was Proteobacteria (54%), followed by Actinobacteria (8%), Bacteroidetes (5%) and Firmicutes (4%). In terms of functions, the most abundant among the metagenome corresponded to phages, transposable elements and plasmids (16%), followed by clustering-based subsystems (11%), carbohydrates (10%), and amino acids and derivatives (9%). This is the first soil metagenomic dataset from dish antennas and radar systems, specifically, underneath the AORD. Data can be used to explore the effect of high frequency electromagnetic waves in soil microbial composition, as well as the possibility of finding bioprospects with potential biomedical and biotechnological applications. |
format | Online Article Text |
id | pubmed-6920479 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-69204792019-12-27 Soil metagenome datasets underneath the Arecibo Observatory reflector dish Rodriguez-Reyes, Miguel G. Rios-Velazquez, Carlos Data Brief Immunology and Microbiology The Arecibo Observatory (AO) located in Arecibo, Puerto Rico, is the most sensitive, powerful and active planetary radar system in the world [1]. One of its principal components is the 305 m-diameter spherical reflector dish (AORD), which is exposed to high frequency electromagnetic waves. To unravel the microbial communities that inhabit this environment, soil samples from underneath the AORD were collected, DNA extracted, and sequenced using Illumina MiSeq. Taxonomic and functional profiles were generated using the MG-RAST server. The most abundant domain was Bacteria (91%), followed by Virus (8%), Archaea (0.9%) and Eukaryota (0.9%). The most abundant phylum was Proteobacteria (54%), followed by Actinobacteria (8%), Bacteroidetes (5%) and Firmicutes (4%). In terms of functions, the most abundant among the metagenome corresponded to phages, transposable elements and plasmids (16%), followed by clustering-based subsystems (11%), carbohydrates (10%), and amino acids and derivatives (9%). This is the first soil metagenomic dataset from dish antennas and radar systems, specifically, underneath the AORD. Data can be used to explore the effect of high frequency electromagnetic waves in soil microbial composition, as well as the possibility of finding bioprospects with potential biomedical and biotechnological applications. Elsevier 2019-10-24 /pmc/articles/PMC6920479/ /pubmed/31886328 http://dx.doi.org/10.1016/j.dib.2019.104710 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Immunology and Microbiology Rodriguez-Reyes, Miguel G. Rios-Velazquez, Carlos Soil metagenome datasets underneath the Arecibo Observatory reflector dish |
title | Soil metagenome datasets underneath the Arecibo Observatory reflector dish |
title_full | Soil metagenome datasets underneath the Arecibo Observatory reflector dish |
title_fullStr | Soil metagenome datasets underneath the Arecibo Observatory reflector dish |
title_full_unstemmed | Soil metagenome datasets underneath the Arecibo Observatory reflector dish |
title_short | Soil metagenome datasets underneath the Arecibo Observatory reflector dish |
title_sort | soil metagenome datasets underneath the arecibo observatory reflector dish |
topic | Immunology and Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920479/ https://www.ncbi.nlm.nih.gov/pubmed/31886328 http://dx.doi.org/10.1016/j.dib.2019.104710 |
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