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Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17

Haloalkane dehalogenases are enzymes with a broad application potential in biocatalysis, bioremediation, biosensing and cell imaging. The new haloalkane dehalogenase DmxA originating from the psychrophilic bacterium Marinobacter sp. ELB17 surprisingly possesses the highest thermal stability (apparen...

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Autores principales: Chrast, Lukas, Tratsiak, Katsiaryna, Planas-Iglesias, Joan, Daniel, Lukas, Prudnikova, Tatyana, Brezovsky, Jan, Bednar, David, Kuta Smatanova, Ivana, Chaloupkova, Radka, Damborsky, Jiri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920932/
https://www.ncbi.nlm.nih.gov/pubmed/31661858
http://dx.doi.org/10.3390/microorganisms7110498
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author Chrast, Lukas
Tratsiak, Katsiaryna
Planas-Iglesias, Joan
Daniel, Lukas
Prudnikova, Tatyana
Brezovsky, Jan
Bednar, David
Kuta Smatanova, Ivana
Chaloupkova, Radka
Damborsky, Jiri
author_facet Chrast, Lukas
Tratsiak, Katsiaryna
Planas-Iglesias, Joan
Daniel, Lukas
Prudnikova, Tatyana
Brezovsky, Jan
Bednar, David
Kuta Smatanova, Ivana
Chaloupkova, Radka
Damborsky, Jiri
author_sort Chrast, Lukas
collection PubMed
description Haloalkane dehalogenases are enzymes with a broad application potential in biocatalysis, bioremediation, biosensing and cell imaging. The new haloalkane dehalogenase DmxA originating from the psychrophilic bacterium Marinobacter sp. ELB17 surprisingly possesses the highest thermal stability (apparent melting temperature T(m,app) = 65.9 °C) of all biochemically characterized wild type haloalkane dehalogenases belonging to subfamily II. The enzyme was successfully expressed and its crystal structure was solved at 1.45 Å resolution. DmxA structure contains several features distinct from known members of haloalkane dehalogenase family: (i) a unique composition of catalytic residues; (ii) a dimeric state mediated by a disulfide bridge; and (iii) narrow tunnels connecting the enzyme active site with the surrounding solvent. The importance of narrow tunnels in such paradoxically high stability of DmxA enzyme was confirmed by computational protein design and mutagenesis experiments.
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spelling pubmed-69209322019-12-24 Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17 Chrast, Lukas Tratsiak, Katsiaryna Planas-Iglesias, Joan Daniel, Lukas Prudnikova, Tatyana Brezovsky, Jan Bednar, David Kuta Smatanova, Ivana Chaloupkova, Radka Damborsky, Jiri Microorganisms Article Haloalkane dehalogenases are enzymes with a broad application potential in biocatalysis, bioremediation, biosensing and cell imaging. The new haloalkane dehalogenase DmxA originating from the psychrophilic bacterium Marinobacter sp. ELB17 surprisingly possesses the highest thermal stability (apparent melting temperature T(m,app) = 65.9 °C) of all biochemically characterized wild type haloalkane dehalogenases belonging to subfamily II. The enzyme was successfully expressed and its crystal structure was solved at 1.45 Å resolution. DmxA structure contains several features distinct from known members of haloalkane dehalogenase family: (i) a unique composition of catalytic residues; (ii) a dimeric state mediated by a disulfide bridge; and (iii) narrow tunnels connecting the enzyme active site with the surrounding solvent. The importance of narrow tunnels in such paradoxically high stability of DmxA enzyme was confirmed by computational protein design and mutagenesis experiments. MDPI 2019-10-28 /pmc/articles/PMC6920932/ /pubmed/31661858 http://dx.doi.org/10.3390/microorganisms7110498 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chrast, Lukas
Tratsiak, Katsiaryna
Planas-Iglesias, Joan
Daniel, Lukas
Prudnikova, Tatyana
Brezovsky, Jan
Bednar, David
Kuta Smatanova, Ivana
Chaloupkova, Radka
Damborsky, Jiri
Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17
title Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17
title_full Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17
title_fullStr Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17
title_full_unstemmed Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17
title_short Deciphering the Structural Basis of High Thermostability of Dehalogenase from Psychrophilic Bacterium Marinobacter sp. ELB17
title_sort deciphering the structural basis of high thermostability of dehalogenase from psychrophilic bacterium marinobacter sp. elb17
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6920932/
https://www.ncbi.nlm.nih.gov/pubmed/31661858
http://dx.doi.org/10.3390/microorganisms7110498
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