Cargando…

A de novo transcriptome assembly for the bath sponge Spongia officinalis, adjusting for microsymbionts

OBJECTIVES: We report a transcriptome acquisition for the bath sponge Spongia officinalis, a non-model marine organism that hosts rich symbiotic microbial communities. To this end, a pipeline was developed to efficiently separate between bacterial expressed genes from those of eukaryotic origin. The...

Descripción completa

Detalles Bibliográficos
Autores principales:	Manousaki, Tereza, Koutsouveli, Vasiliki, Lagnel, Jacques, Kollias, Spyridon, Tsigenopoulos, Costas S., Arvanitidis, Christos, Magoulas, Antonios, Dounas, Costas, Dailianis, Thanos
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2019
Materias:	Data Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6921574/ https://www.ncbi.nlm.nih.gov/pubmed/31852508 http://dx.doi.org/10.1186/s13104-019-4843-6

Ejemplares similares

SnakeCube: containerized and automated pipeline for de novo genome assembly in HPC environments
por: Angelova, Nelina, et al.
Publicado: (2022)

Testing the robustness of Citizen Science projects: Evaluating the results of pilot project COMBER
por: Chatzigeorgiou, Giorgos, et al.
Publicado: (2016)

Exploring a Nonmodel Teleost Genome Through RAD Sequencing—Linkage Mapping in Common Pandora, Pagellus erythrinus and Comparative Genomic Analysis
por: Manousaki, Tereza, et al.
Publicado: (2015)

The Gene Toolkit Implicated in Functional Sex in Sparidae Hermaphrodites: Inferences From Comparative Transcriptomics
por: Tsakogiannis, Alexandros, et al.
Publicado: (2019)

The sex-specific transcriptome of the hermaphrodite sparid sharpsnout seabream (Diplodus puntazzo)
por: Manousaki, Tereza, et al.
Publicado: (2014)

Anticonvulsant and analgesic activities of crude extract and its fractions of the defensive secretion from the Mediterranean sponge, Spongia officinalis
por: Dellai, Afef, et al.
Publicado: (2012)

Draft Genome Sequence of Bacillus sp. Strain SPB7, Isolated from the Marine Sponge Spongia officinalis
por: Bhattacharya, Dhruba, et al.
Publicado: (2020)

Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling
por: Natsidis, Paschalis, et al.
Publicado: (2019)

Patterns of Chemical Diversity in the Mediterranean Sponge Spongia lamella
por: Noyer, Charlotte, et al.
Publicado: (2011)

Furanoterpene Diversity and Variability in the Marine Sponge Spongia officinalis, from Untargeted LC–MS/MS Metabolomic Profiling to Furanolactam Derivatives
por: Bauvais, Cléa, et al.
Publicado: (2017)

Genome Analysis of Lagocephalus sceleratus: Unraveling the Genomic Landscape of a Successful Invader
por: Danis, Theodoros, et al.
Publicado: (2021)

Comparative Metagenomics Reveals the Distinctive Adaptive Features of the Spongia officinalis Endosymbiotic Consortium
por: Karimi, Elham, et al.
Publicado: (2017)

Spongia Tosta
por: Smith, C. Carleton
Publicado: (1887)

Cytotoxic Furanoditerpenes from the Sponge Spongia tubulifera Collected in the Mexican Caribbean
por: Pech-Puch, Dawrin, et al.
Publicado: (2019)

NS3 helicase inhibitory potential of the marine sponge Spongia irregularis
por: Abdelaleem, Enas Reda, et al.
Publicado: (2022)

Engaging the broader community in biodiversity research: the concept of the COMBER pilot project for divers in ViBRANT
por: Arvanitidis, Christos, et al.
Publicado: (2011)

Quantitative Trait Loci Involved in Sex Determination and Body Growth in the Gilthead Sea Bream (Sparus aurata L.) through Targeted Genome Scan
por: Loukovitis, Dimitrios, et al.
Publicado: (2011)

0s and 1s in marine molecular research: a regional HPC perspective
por: Zafeiropoulos, Haris, et al.
Publicado: (2021)

Community Parameters and Genome-Wide RAD-Seq Loci of Ceratothoa oestroides Imply Its Transfer between Farmed European Sea Bass and Wild Farm-Aggregating Fish
por: Mladineo, Ivona, et al.
Publicado: (2021)

Chromosome genome assembly for the meagre, Argyrosomus regius, reveals species adaptations and sciaenid sex-related locus evolution
por: Papadogiannis, Vasileios, et al.
Publicado: (2023)

The Chemically Highly Diversified Metabolites from the Red Sea Marine Sponge Spongia sp.
por: Tai, Chi-Jen, et al.
Publicado: (2022)

Transcriptome analysis of flathead grey mullet (Mugil cephalus) ovarian development induced by recombinant gonadotropin hormones
por: Ramos-Júdez, Sandra, et al.
Publicado: (2022)

Furanoditerpenes from Spongia (Spongia) tubulifera Display Mitochondrial-Mediated Neuroprotective Effects by Targeting Cyclophilin D
por: Alvariño, Rebeca, et al.
Publicado: (2022)

Micro-computed tomography: Introducing new dimensions to taxonomy
por: Faulwetter, Sarah, et al.
Publicado: (2013)

Mr. Ring, on the Use of Spongia Usta
por: Ring, John
Publicado: (1804)

The culturable mycobiota associated with three Atlantic sponges, including two new species: Thelebolus balaustiformis and T. spongiae
por: Bovio, E., et al.
Publicado: (2018)

The transcriptomic signature of different sexes in two protogynous hermaphrodites: Insights into the molecular network underlying sex phenotype in fish
por: Tsakogiannis, A., et al.
Publicado: (2018)

Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype
por: Ilias, Aris, et al.
Publicado: (2015)

Scanning of Genetic Variants and Genetic Mapping of Phenotypic Traits in Gilthead Sea Bream Through ddRAD Sequencing
por: Kyriakis, Dimitrios, et al.
Publicado: (2019)

Isolation of Scalimides A–L: β-Alanine-Bearing Scalarane Analogs from the Marine Sponge Spongia sp.
por: Shin, A-Young, et al.
Publicado: (2022)

Notes from a Lecture upon Spongia
por: Gee,
Publicado: (1887)

The Role of Spongia sp. in the Discovery of Marine Lead Compounds
por: Máximo, Patrícia, et al.
Publicado: (2016)

Scalalactams A–D, Scalarane Sesterterpenes with a γ-Lactam Moiety from a Korean Spongia Sp. Marine Sponge
por: Yang, Inho, et al.
Publicado: (2018)

New 3,4-seco-3,19-Dinor- and Spongian-Based Diterpenoid Lactones from the Marine Sponge Spongia sp.
por: Tai, Chi-Jen, et al.
Publicado: (2023)

Draft Genome Sequence of Microbacterium sp. Strain Alg239_V18, an Actinobacterium Retrieved from the Marine Sponge Spongia sp.
por: Karimi, Elham, et al.
Publicado: (2017)

Antibacterial scalarane from Doriprismatica stellata nudibranchs (Gastropoda, Nudibranchia), egg ribbons, and their dietary sponge Spongia cf. agaricina (Demospongiae, Dictyoceratida)
por: Hertzer, Cora, et al.
Publicado: (2020)

Spongiapyridine and Related Spongians Isolated from an Indonesian Spongia sp.
por: Parrish, Stephen M., et al.
Publicado: (2014)

Oogenesis and lipid metabolism in the deep-sea sponge Phakellia ventilabrum (Linnaeus, 1767)
por: Koutsouveli, Vasiliki, et al.
Publicado: (2022)

A Multi-Species Investigation of Sponges’ Filtering Activity towards Marine Microalgae
por: Varamogianni-Mamatsi, Despoina, et al.
Publicado: (2021)

Spongenolactones A–C, Bioactive 5,5,6,6,5-Pentacyclic Spongian Diterpenes from the Red Sea Sponge Spongia sp.
por: Tai, Chi-Jen, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_d6sf9v4s8ta364f1tj3jncc68c