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Video compression to support the expansion of whole-slide imaging into cytology

Digital screening and diagnosis from cytology slides can be aided by capturing multiple focal planes. However, using conventional methods, the large file sizes of high-resolution whole-slide images increase linearly with the number of focal planes acquired, leading to significant data storage and ba...

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Detalles Bibliográficos
Autores principales: Zarella, Mark D., Jakubowski, Jennifer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6921690/
https://www.ncbi.nlm.nih.gov/pubmed/31890747
http://dx.doi.org/10.1117/1.JMI.6.4.047502
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author Zarella, Mark D.
Jakubowski, Jennifer
author_facet Zarella, Mark D.
Jakubowski, Jennifer
author_sort Zarella, Mark D.
collection PubMed
description Digital screening and diagnosis from cytology slides can be aided by capturing multiple focal planes. However, using conventional methods, the large file sizes of high-resolution whole-slide images increase linearly with the number of focal planes acquired, leading to significant data storage and bandwidth requirements for the efficient storage and transfer of cytology virtual slides. We investigated whether a sequence of focal planes contained sufficient redundancy to efficiently compress virtual slides across focal planes by applying a commonly available video compression standard, high-efficiency video coding (HEVC). By developing an adaptive algorithm that applied compression to achieve a target image quality, we found that the compression ratio of HEVC exceeded that obtained using JPEG and JPEG2000 compression while maintaining a comparable level of image quality. These results suggest an alternative method for the efficient storage and transfer of whole-slide images that contain multiple focal planes, expanding the utility of this rapidly evolving imaging technology into cytology.
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spelling pubmed-69216902020-12-19 Video compression to support the expansion of whole-slide imaging into cytology Zarella, Mark D. Jakubowski, Jennifer J Med Imaging (Bellingham) Digital Pathology Digital screening and diagnosis from cytology slides can be aided by capturing multiple focal planes. However, using conventional methods, the large file sizes of high-resolution whole-slide images increase linearly with the number of focal planes acquired, leading to significant data storage and bandwidth requirements for the efficient storage and transfer of cytology virtual slides. We investigated whether a sequence of focal planes contained sufficient redundancy to efficiently compress virtual slides across focal planes by applying a commonly available video compression standard, high-efficiency video coding (HEVC). By developing an adaptive algorithm that applied compression to achieve a target image quality, we found that the compression ratio of HEVC exceeded that obtained using JPEG and JPEG2000 compression while maintaining a comparable level of image quality. These results suggest an alternative method for the efficient storage and transfer of whole-slide images that contain multiple focal planes, expanding the utility of this rapidly evolving imaging technology into cytology. Society of Photo-Optical Instrumentation Engineers 2019-12-19 2019-10 /pmc/articles/PMC6921690/ /pubmed/31890747 http://dx.doi.org/10.1117/1.JMI.6.4.047502 Text en © The Authors. Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
spellingShingle Digital Pathology
Zarella, Mark D.
Jakubowski, Jennifer
Video compression to support the expansion of whole-slide imaging into cytology
title Video compression to support the expansion of whole-slide imaging into cytology
title_full Video compression to support the expansion of whole-slide imaging into cytology
title_fullStr Video compression to support the expansion of whole-slide imaging into cytology
title_full_unstemmed Video compression to support the expansion of whole-slide imaging into cytology
title_short Video compression to support the expansion of whole-slide imaging into cytology
title_sort video compression to support the expansion of whole-slide imaging into cytology
topic Digital Pathology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6921690/
https://www.ncbi.nlm.nih.gov/pubmed/31890747
http://dx.doi.org/10.1117/1.JMI.6.4.047502
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