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Development, characterization, and cross‐amplification of 17 microsatellite markers for Filipendula vulgaris
PREMISE: Polymorphic microsatellite markers were developed as a tool for genetic investigations of Filipendula vulgaris (Rosaceae) and related species. METHODS AND RESULTS: Seventeen new polymorphic microsatellite markers were developed for F. vulgaris using the Illumina MiSeq platform. Polymorphism...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6923706/ https://www.ncbi.nlm.nih.gov/pubmed/31890353 http://dx.doi.org/10.1002/aps3.11307 |
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author | Čortan, Dijana Krak, Karol Vít, Petr Mandák, Bohumil |
author_facet | Čortan, Dijana Krak, Karol Vít, Petr Mandák, Bohumil |
author_sort | Čortan, Dijana |
collection | PubMed |
description | PREMISE: Polymorphic microsatellite markers were developed as a tool for genetic investigations of Filipendula vulgaris (Rosaceae) and related species. METHODS AND RESULTS: Seventeen new polymorphic microsatellite markers were developed for F. vulgaris using the Illumina MiSeq platform. Polymorphism of the 17 loci was tested in three populations. We identified a total of 203 alleles, ranging from four to 19 per locus, with levels of observed and expected heterozygosity ranging from 0.267 to 1.000 and 0.461 to 0.899, respectively. Primers were also tested for cross‐amplification in three related species. Seven loci successfully cross‐amplified in F. camtschatica and F. ulmaria, whereas we detected positive cross‐amplification in only three loci in Geum urbanum. CONCLUSIONS: The newly developed microsatellite primers will serve as useful genetic tools for further population genetic studies on F. vulgaris and related species. |
format | Online Article Text |
id | pubmed-6923706 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-69237062019-12-30 Development, characterization, and cross‐amplification of 17 microsatellite markers for Filipendula vulgaris Čortan, Dijana Krak, Karol Vít, Petr Mandák, Bohumil Appl Plant Sci Primer Notes PREMISE: Polymorphic microsatellite markers were developed as a tool for genetic investigations of Filipendula vulgaris (Rosaceae) and related species. METHODS AND RESULTS: Seventeen new polymorphic microsatellite markers were developed for F. vulgaris using the Illumina MiSeq platform. Polymorphism of the 17 loci was tested in three populations. We identified a total of 203 alleles, ranging from four to 19 per locus, with levels of observed and expected heterozygosity ranging from 0.267 to 1.000 and 0.461 to 0.899, respectively. Primers were also tested for cross‐amplification in three related species. Seven loci successfully cross‐amplified in F. camtschatica and F. ulmaria, whereas we detected positive cross‐amplification in only three loci in Geum urbanum. CONCLUSIONS: The newly developed microsatellite primers will serve as useful genetic tools for further population genetic studies on F. vulgaris and related species. John Wiley and Sons Inc. 2019-12-08 /pmc/articles/PMC6923706/ /pubmed/31890353 http://dx.doi.org/10.1002/aps3.11307 Text en © 2019 Čortan et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Primer Notes Čortan, Dijana Krak, Karol Vít, Petr Mandák, Bohumil Development, characterization, and cross‐amplification of 17 microsatellite markers for Filipendula vulgaris |
title | Development, characterization, and cross‐amplification of 17 microsatellite markers for Filipendula vulgaris
|
title_full | Development, characterization, and cross‐amplification of 17 microsatellite markers for Filipendula vulgaris
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title_fullStr | Development, characterization, and cross‐amplification of 17 microsatellite markers for Filipendula vulgaris
|
title_full_unstemmed | Development, characterization, and cross‐amplification of 17 microsatellite markers for Filipendula vulgaris
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title_short | Development, characterization, and cross‐amplification of 17 microsatellite markers for Filipendula vulgaris
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title_sort | development, characterization, and cross‐amplification of 17 microsatellite markers for filipendula vulgaris |
topic | Primer Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6923706/ https://www.ncbi.nlm.nih.gov/pubmed/31890353 http://dx.doi.org/10.1002/aps3.11307 |
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