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Fourteen polymorphic microsatellite markers for the widespread Labrador tea (Rhododendron groenlandicum)

PREMISE: Microsatellite markers were developed for Labrador tea (Rhododendron groenlandicum, Ericaceae) to facilitate downstream genetic investigation of this species and the extremely closely related, circumboreal Rhododendron subsect. Ledum. METHODS AND RESULTS: Forty‐eight primer pairs were desig...

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Detalles Bibliográficos
Autores principales: Sheik, Matthew L., LaBounty, Kitty L., Mitchell, Erika, Gillespie, Emily L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6923708/
https://www.ncbi.nlm.nih.gov/pubmed/31890352
http://dx.doi.org/10.1002/aps3.11306
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author Sheik, Matthew L.
LaBounty, Kitty L.
Mitchell, Erika
Gillespie, Emily L.
author_facet Sheik, Matthew L.
LaBounty, Kitty L.
Mitchell, Erika
Gillespie, Emily L.
author_sort Sheik, Matthew L.
collection PubMed
description PREMISE: Microsatellite markers were developed for Labrador tea (Rhododendron groenlandicum, Ericaceae) to facilitate downstream genetic investigation of this species and the extremely closely related, circumboreal Rhododendron subsect. Ledum. METHODS AND RESULTS: Forty‐eight primer pairs were designed using Illumina data and screened for excellent amplification. Sixteen successful pairs were developed as microsatellite markers using fluorescently labeled amplification to generate chromatogram data. These data were evaluated for intrapopulation and interpopulation variability in three populations from Alaska and Maine, USA, and the Northwest Territories, Canada. Fourteen polymorphic markers genotyped reliably, each with one to eight alleles. Cluster analysis indicates that across the range, populations can be easily discriminated. Cross‐amplification in other Rhododendron subsect. Ledum species shows broad application of the developed markers within this small, well‐supported clade. CONCLUSIONS: These microsatellite markers exhibit significant variability and will be useful in population genetics within R. groenlandicum and for investigation of species boundaries across Rhododendron subsect. Ledum.
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spelling pubmed-69237082019-12-30 Fourteen polymorphic microsatellite markers for the widespread Labrador tea (Rhododendron groenlandicum) Sheik, Matthew L. LaBounty, Kitty L. Mitchell, Erika Gillespie, Emily L. Appl Plant Sci Primer Notes PREMISE: Microsatellite markers were developed for Labrador tea (Rhododendron groenlandicum, Ericaceae) to facilitate downstream genetic investigation of this species and the extremely closely related, circumboreal Rhododendron subsect. Ledum. METHODS AND RESULTS: Forty‐eight primer pairs were designed using Illumina data and screened for excellent amplification. Sixteen successful pairs were developed as microsatellite markers using fluorescently labeled amplification to generate chromatogram data. These data were evaluated for intrapopulation and interpopulation variability in three populations from Alaska and Maine, USA, and the Northwest Territories, Canada. Fourteen polymorphic markers genotyped reliably, each with one to eight alleles. Cluster analysis indicates that across the range, populations can be easily discriminated. Cross‐amplification in other Rhododendron subsect. Ledum species shows broad application of the developed markers within this small, well‐supported clade. CONCLUSIONS: These microsatellite markers exhibit significant variability and will be useful in population genetics within R. groenlandicum and for investigation of species boundaries across Rhododendron subsect. Ledum. John Wiley and Sons Inc. 2019-12-06 /pmc/articles/PMC6923708/ /pubmed/31890352 http://dx.doi.org/10.1002/aps3.11306 Text en © 2019 Sheik et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Primer Notes
Sheik, Matthew L.
LaBounty, Kitty L.
Mitchell, Erika
Gillespie, Emily L.
Fourteen polymorphic microsatellite markers for the widespread Labrador tea (Rhododendron groenlandicum)
title Fourteen polymorphic microsatellite markers for the widespread Labrador tea (Rhododendron groenlandicum)
title_full Fourteen polymorphic microsatellite markers for the widespread Labrador tea (Rhododendron groenlandicum)
title_fullStr Fourteen polymorphic microsatellite markers for the widespread Labrador tea (Rhododendron groenlandicum)
title_full_unstemmed Fourteen polymorphic microsatellite markers for the widespread Labrador tea (Rhododendron groenlandicum)
title_short Fourteen polymorphic microsatellite markers for the widespread Labrador tea (Rhododendron groenlandicum)
title_sort fourteen polymorphic microsatellite markers for the widespread labrador tea (rhododendron groenlandicum)
topic Primer Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6923708/
https://www.ncbi.nlm.nih.gov/pubmed/31890352
http://dx.doi.org/10.1002/aps3.11306
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