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Identification of a four-long non-coding RNA signature in predicting breast cancer survival

Long non-coding RNAs (lncRNAs) serve key roles in tumorigenesis and are differentially expressed in cancer. Using bioinformatics and statistical methods, the present study aimed to identify an lncRNA signature to predict breast cancer survival. The gene expression data of 768 patients with breast ca...

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Autores principales: Zhu, Mingjie, Lv, Qing, Huang, Hu, Sun, Chunlei, Pang, Da, Wu, Junqiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924049/
https://www.ncbi.nlm.nih.gov/pubmed/31897133
http://dx.doi.org/10.3892/ol.2019.11063
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author Zhu, Mingjie
Lv, Qing
Huang, Hu
Sun, Chunlei
Pang, Da
Wu, Junqiang
author_facet Zhu, Mingjie
Lv, Qing
Huang, Hu
Sun, Chunlei
Pang, Da
Wu, Junqiang
author_sort Zhu, Mingjie
collection PubMed
description Long non-coding RNAs (lncRNAs) serve key roles in tumorigenesis and are differentially expressed in cancer. Using bioinformatics and statistical methods, the present study aimed to identify an lncRNA signature to predict breast cancer survival. The gene expression data of 768 patients with breast cancer were downloaded from The Cancer Genome Atlas database, and Cox regression, Kaplan-Meier and receiver operating characteristic (ROC) analyses were performed to construct and validate a predictive model. Gene Ontology term enrichment and Kyoto Encyclopedia of Genes and Genomes pathway analysis were employed to predict the functions of the indicated lncRNAs. A signature consisting of four lncRNAs, including PVT1, MAPT-AS1, LINC00667 and LINC00938, was identified, and patients were subsequently divided into high- and low-risk groups according to the median risk score. Kaplan-Meier analysis confirmed that patients in the high-risk group exhibited significantly poorer overall survival rate in both the training (P=0.0151) and the validation set (P=0.0016); furthermore, ROC analysis confirmed that the model could predict patient survival with a certain sensitivity and specificity. In conclusion, the four-lncRNA signature presents a potential prognostic biomarker for breast cancer that may be relevant for clinical application.
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spelling pubmed-69240492020-01-02 Identification of a four-long non-coding RNA signature in predicting breast cancer survival Zhu, Mingjie Lv, Qing Huang, Hu Sun, Chunlei Pang, Da Wu, Junqiang Oncol Lett Articles Long non-coding RNAs (lncRNAs) serve key roles in tumorigenesis and are differentially expressed in cancer. Using bioinformatics and statistical methods, the present study aimed to identify an lncRNA signature to predict breast cancer survival. The gene expression data of 768 patients with breast cancer were downloaded from The Cancer Genome Atlas database, and Cox regression, Kaplan-Meier and receiver operating characteristic (ROC) analyses were performed to construct and validate a predictive model. Gene Ontology term enrichment and Kyoto Encyclopedia of Genes and Genomes pathway analysis were employed to predict the functions of the indicated lncRNAs. A signature consisting of four lncRNAs, including PVT1, MAPT-AS1, LINC00667 and LINC00938, was identified, and patients were subsequently divided into high- and low-risk groups according to the median risk score. Kaplan-Meier analysis confirmed that patients in the high-risk group exhibited significantly poorer overall survival rate in both the training (P=0.0151) and the validation set (P=0.0016); furthermore, ROC analysis confirmed that the model could predict patient survival with a certain sensitivity and specificity. In conclusion, the four-lncRNA signature presents a potential prognostic biomarker for breast cancer that may be relevant for clinical application. D.A. Spandidos 2020-01 2019-11-07 /pmc/articles/PMC6924049/ /pubmed/31897133 http://dx.doi.org/10.3892/ol.2019.11063 Text en Copyright: © Zhu et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Zhu, Mingjie
Lv, Qing
Huang, Hu
Sun, Chunlei
Pang, Da
Wu, Junqiang
Identification of a four-long non-coding RNA signature in predicting breast cancer survival
title Identification of a four-long non-coding RNA signature in predicting breast cancer survival
title_full Identification of a four-long non-coding RNA signature in predicting breast cancer survival
title_fullStr Identification of a four-long non-coding RNA signature in predicting breast cancer survival
title_full_unstemmed Identification of a four-long non-coding RNA signature in predicting breast cancer survival
title_short Identification of a four-long non-coding RNA signature in predicting breast cancer survival
title_sort identification of a four-long non-coding rna signature in predicting breast cancer survival
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924049/
https://www.ncbi.nlm.nih.gov/pubmed/31897133
http://dx.doi.org/10.3892/ol.2019.11063
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