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Identification of a four-long non-coding RNA signature in predicting breast cancer survival
Long non-coding RNAs (lncRNAs) serve key roles in tumorigenesis and are differentially expressed in cancer. Using bioinformatics and statistical methods, the present study aimed to identify an lncRNA signature to predict breast cancer survival. The gene expression data of 768 patients with breast ca...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
D.A. Spandidos
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924049/ https://www.ncbi.nlm.nih.gov/pubmed/31897133 http://dx.doi.org/10.3892/ol.2019.11063 |
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author | Zhu, Mingjie Lv, Qing Huang, Hu Sun, Chunlei Pang, Da Wu, Junqiang |
author_facet | Zhu, Mingjie Lv, Qing Huang, Hu Sun, Chunlei Pang, Da Wu, Junqiang |
author_sort | Zhu, Mingjie |
collection | PubMed |
description | Long non-coding RNAs (lncRNAs) serve key roles in tumorigenesis and are differentially expressed in cancer. Using bioinformatics and statistical methods, the present study aimed to identify an lncRNA signature to predict breast cancer survival. The gene expression data of 768 patients with breast cancer were downloaded from The Cancer Genome Atlas database, and Cox regression, Kaplan-Meier and receiver operating characteristic (ROC) analyses were performed to construct and validate a predictive model. Gene Ontology term enrichment and Kyoto Encyclopedia of Genes and Genomes pathway analysis were employed to predict the functions of the indicated lncRNAs. A signature consisting of four lncRNAs, including PVT1, MAPT-AS1, LINC00667 and LINC00938, was identified, and patients were subsequently divided into high- and low-risk groups according to the median risk score. Kaplan-Meier analysis confirmed that patients in the high-risk group exhibited significantly poorer overall survival rate in both the training (P=0.0151) and the validation set (P=0.0016); furthermore, ROC analysis confirmed that the model could predict patient survival with a certain sensitivity and specificity. In conclusion, the four-lncRNA signature presents a potential prognostic biomarker for breast cancer that may be relevant for clinical application. |
format | Online Article Text |
id | pubmed-6924049 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | D.A. Spandidos |
record_format | MEDLINE/PubMed |
spelling | pubmed-69240492020-01-02 Identification of a four-long non-coding RNA signature in predicting breast cancer survival Zhu, Mingjie Lv, Qing Huang, Hu Sun, Chunlei Pang, Da Wu, Junqiang Oncol Lett Articles Long non-coding RNAs (lncRNAs) serve key roles in tumorigenesis and are differentially expressed in cancer. Using bioinformatics and statistical methods, the present study aimed to identify an lncRNA signature to predict breast cancer survival. The gene expression data of 768 patients with breast cancer were downloaded from The Cancer Genome Atlas database, and Cox regression, Kaplan-Meier and receiver operating characteristic (ROC) analyses were performed to construct and validate a predictive model. Gene Ontology term enrichment and Kyoto Encyclopedia of Genes and Genomes pathway analysis were employed to predict the functions of the indicated lncRNAs. A signature consisting of four lncRNAs, including PVT1, MAPT-AS1, LINC00667 and LINC00938, was identified, and patients were subsequently divided into high- and low-risk groups according to the median risk score. Kaplan-Meier analysis confirmed that patients in the high-risk group exhibited significantly poorer overall survival rate in both the training (P=0.0151) and the validation set (P=0.0016); furthermore, ROC analysis confirmed that the model could predict patient survival with a certain sensitivity and specificity. In conclusion, the four-lncRNA signature presents a potential prognostic biomarker for breast cancer that may be relevant for clinical application. D.A. Spandidos 2020-01 2019-11-07 /pmc/articles/PMC6924049/ /pubmed/31897133 http://dx.doi.org/10.3892/ol.2019.11063 Text en Copyright: © Zhu et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Articles Zhu, Mingjie Lv, Qing Huang, Hu Sun, Chunlei Pang, Da Wu, Junqiang Identification of a four-long non-coding RNA signature in predicting breast cancer survival |
title | Identification of a four-long non-coding RNA signature in predicting breast cancer survival |
title_full | Identification of a four-long non-coding RNA signature in predicting breast cancer survival |
title_fullStr | Identification of a four-long non-coding RNA signature in predicting breast cancer survival |
title_full_unstemmed | Identification of a four-long non-coding RNA signature in predicting breast cancer survival |
title_short | Identification of a four-long non-coding RNA signature in predicting breast cancer survival |
title_sort | identification of a four-long non-coding rna signature in predicting breast cancer survival |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924049/ https://www.ncbi.nlm.nih.gov/pubmed/31897133 http://dx.doi.org/10.3892/ol.2019.11063 |
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