Cargando…
Exploring snake occurrence records: Spatial biases and marginal gains from accessible social media
A species’ distribution provides fundamental information on: climatic niche, biogeography, and conservation status. Species distribution models often use occurrence records from biodiversity databases, subject to spatial and taxonomic biases. Deficiencies in occurrence data can lead to incomplete sp...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924322/ https://www.ncbi.nlm.nih.gov/pubmed/31871833 http://dx.doi.org/10.7717/peerj.8059 |
_version_ | 1783481707159093248 |
---|---|
author | Marshall, Benjamin M. Strine, Colin T. |
author_facet | Marshall, Benjamin M. Strine, Colin T. |
author_sort | Marshall, Benjamin M. |
collection | PubMed |
description | A species’ distribution provides fundamental information on: climatic niche, biogeography, and conservation status. Species distribution models often use occurrence records from biodiversity databases, subject to spatial and taxonomic biases. Deficiencies in occurrence data can lead to incomplete species distribution estimates. We can incorporate other data sources to supplement occurrence datasets. The general public is creating (via GPS-enabled cameras to photograph wildlife) incidental occurrence records that may present an opportunity to improve species distribution models. We investigated (1) occurrence data of a cryptic group of animals: non-marine snakes, in a biodiversity database (Global Biodiversity Information Facility (GBIF)) and determined (2) whether incidental occurrence records extracted from geo-tagged social media images (Flickr) could improve distribution models for 18 tropical snake species. We provide R code to search for and extract data from images using Flickr’s API. We show the biodiversity database’s 302,386 records disproportionately originate from North America, Europe and Oceania (250,063, 82.7%), with substantial gaps in tropical areas that host the highest snake diversity. North America, Europe and Oceania averaged several hundred records per species; whereas Asia, Africa and South America averaged less than 35 per species. Occurrence density showed similar patterns; Asia, Africa and South America have roughly ten-fold fewer records per 100 km(2)than other regions. Social media provided 44,687 potential records. However, including them in distribution models only marginally impacted niche estimations; niche overlap indices were consistently over 0.9. Similarly, we show negligible differences in Maxent model performance between models trained using GBIF-only and Flickr-supplemented datasets. Model performance appeared dependent on species, rather than number of occurrences or training dataset. We suggest that for tropical snakes, accessible social media currently fails to deliver appreciable benefits for estimating species distributions; but due to the variation between species and the rapid growth in social media data, may still be worth considering in future contexts. |
format | Online Article Text |
id | pubmed-6924322 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-69243222019-12-23 Exploring snake occurrence records: Spatial biases and marginal gains from accessible social media Marshall, Benjamin M. Strine, Colin T. PeerJ Biodiversity A species’ distribution provides fundamental information on: climatic niche, biogeography, and conservation status. Species distribution models often use occurrence records from biodiversity databases, subject to spatial and taxonomic biases. Deficiencies in occurrence data can lead to incomplete species distribution estimates. We can incorporate other data sources to supplement occurrence datasets. The general public is creating (via GPS-enabled cameras to photograph wildlife) incidental occurrence records that may present an opportunity to improve species distribution models. We investigated (1) occurrence data of a cryptic group of animals: non-marine snakes, in a biodiversity database (Global Biodiversity Information Facility (GBIF)) and determined (2) whether incidental occurrence records extracted from geo-tagged social media images (Flickr) could improve distribution models for 18 tropical snake species. We provide R code to search for and extract data from images using Flickr’s API. We show the biodiversity database’s 302,386 records disproportionately originate from North America, Europe and Oceania (250,063, 82.7%), with substantial gaps in tropical areas that host the highest snake diversity. North America, Europe and Oceania averaged several hundred records per species; whereas Asia, Africa and South America averaged less than 35 per species. Occurrence density showed similar patterns; Asia, Africa and South America have roughly ten-fold fewer records per 100 km(2)than other regions. Social media provided 44,687 potential records. However, including them in distribution models only marginally impacted niche estimations; niche overlap indices were consistently over 0.9. Similarly, we show negligible differences in Maxent model performance between models trained using GBIF-only and Flickr-supplemented datasets. Model performance appeared dependent on species, rather than number of occurrences or training dataset. We suggest that for tropical snakes, accessible social media currently fails to deliver appreciable benefits for estimating species distributions; but due to the variation between species and the rapid growth in social media data, may still be worth considering in future contexts. PeerJ Inc. 2019-12-17 /pmc/articles/PMC6924322/ /pubmed/31871833 http://dx.doi.org/10.7717/peerj.8059 Text en ©2019 Marshall and Strine https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Biodiversity Marshall, Benjamin M. Strine, Colin T. Exploring snake occurrence records: Spatial biases and marginal gains from accessible social media |
title | Exploring snake occurrence records: Spatial biases and marginal gains from accessible social media |
title_full | Exploring snake occurrence records: Spatial biases and marginal gains from accessible social media |
title_fullStr | Exploring snake occurrence records: Spatial biases and marginal gains from accessible social media |
title_full_unstemmed | Exploring snake occurrence records: Spatial biases and marginal gains from accessible social media |
title_short | Exploring snake occurrence records: Spatial biases and marginal gains from accessible social media |
title_sort | exploring snake occurrence records: spatial biases and marginal gains from accessible social media |
topic | Biodiversity |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924322/ https://www.ncbi.nlm.nih.gov/pubmed/31871833 http://dx.doi.org/10.7717/peerj.8059 |
work_keys_str_mv | AT marshallbenjaminm exploringsnakeoccurrencerecordsspatialbiasesandmarginalgainsfromaccessiblesocialmedia AT strinecolint exploringsnakeoccurrencerecordsspatialbiasesandmarginalgainsfromaccessiblesocialmedia |