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A prospective compound screening contest identified broader inhibitors for Sirtuin 1

Potential inhibitors of a target biomolecule, NAD-dependent deacetylase Sirtuin 1, were identified by a contest-based approach, in which participants were asked to propose a prioritized list of 400 compounds from a designated compound library containing 2.5 million compounds using in silico methods...

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Autores principales: Chiba, Shuntaro, Ohue, Masahito, Gryniukova, Anastasiia, Borysko, Petro, Zozulya, Sergey, Yasuo, Nobuaki, Yoshino, Ryunosuke, Ikeda, Kazuyoshi, Shin, Woong-Hee, Kihara, Daisuke, Iwadate, Mitsuo, Umeyama, Hideaki, Ichikawa, Takaaki, Teramoto, Reiji, Hsin, Kun-Yi, Gupta, Vipul, Kitano, Hiroaki, Sakamoto, Mika, Higuchi, Akiko, Miura, Nobuaki, Yura, Kei, Mochizuki, Masahiro, Ramakrishnan, Chandrasekaran, Thangakani, A. Mary, Velmurugan, D., Gromiha, M. Michael, Nakane, Itsuo, Uchida, Nanako, Hakariya, Hayase, Tan, Modong, Nakamura, Hironori K., Suzuki, Shogo D., Ito, Tomoki, Kawatani, Masahiro, Kudoh, Kentaroh, Takashina, Sakurako, Yamamoto, Kazuki Z., Moriwaki, Yoshitaka, Oda, Keita, Kobayashi, Daisuke, Okuno, Tatsuya, Minami, Shintaro, Chikenji, George, Prathipati, Philip, Nagao, Chioko, Mohsen, Attayeb, Ito, Mari, Mizuguchi, Kenji, Honma, Teruki, Ishida, Takashi, Hirokawa, Takatsugu, Akiyama, Yutaka, Sekijima, Masakazu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6925144/
https://www.ncbi.nlm.nih.gov/pubmed/31863054
http://dx.doi.org/10.1038/s41598-019-55069-y
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author Chiba, Shuntaro
Ohue, Masahito
Gryniukova, Anastasiia
Borysko, Petro
Zozulya, Sergey
Yasuo, Nobuaki
Yoshino, Ryunosuke
Ikeda, Kazuyoshi
Shin, Woong-Hee
Kihara, Daisuke
Iwadate, Mitsuo
Umeyama, Hideaki
Ichikawa, Takaaki
Teramoto, Reiji
Hsin, Kun-Yi
Gupta, Vipul
Kitano, Hiroaki
Sakamoto, Mika
Higuchi, Akiko
Miura, Nobuaki
Yura, Kei
Mochizuki, Masahiro
Ramakrishnan, Chandrasekaran
Thangakani, A. Mary
Velmurugan, D.
Gromiha, M. Michael
Nakane, Itsuo
Uchida, Nanako
Hakariya, Hayase
Tan, Modong
Nakamura, Hironori K.
Suzuki, Shogo D.
Ito, Tomoki
Kawatani, Masahiro
Kudoh, Kentaroh
Takashina, Sakurako
Yamamoto, Kazuki Z.
Moriwaki, Yoshitaka
Oda, Keita
Kobayashi, Daisuke
Okuno, Tatsuya
Minami, Shintaro
Chikenji, George
Prathipati, Philip
Nagao, Chioko
Mohsen, Attayeb
Ito, Mari
Mizuguchi, Kenji
Honma, Teruki
Ishida, Takashi
Hirokawa, Takatsugu
Akiyama, Yutaka
Sekijima, Masakazu
author_facet Chiba, Shuntaro
Ohue, Masahito
Gryniukova, Anastasiia
Borysko, Petro
Zozulya, Sergey
Yasuo, Nobuaki
Yoshino, Ryunosuke
Ikeda, Kazuyoshi
Shin, Woong-Hee
Kihara, Daisuke
Iwadate, Mitsuo
Umeyama, Hideaki
Ichikawa, Takaaki
Teramoto, Reiji
Hsin, Kun-Yi
Gupta, Vipul
Kitano, Hiroaki
Sakamoto, Mika
Higuchi, Akiko
Miura, Nobuaki
Yura, Kei
Mochizuki, Masahiro
Ramakrishnan, Chandrasekaran
Thangakani, A. Mary
Velmurugan, D.
Gromiha, M. Michael
Nakane, Itsuo
Uchida, Nanako
Hakariya, Hayase
Tan, Modong
Nakamura, Hironori K.
Suzuki, Shogo D.
Ito, Tomoki
Kawatani, Masahiro
Kudoh, Kentaroh
Takashina, Sakurako
Yamamoto, Kazuki Z.
Moriwaki, Yoshitaka
Oda, Keita
Kobayashi, Daisuke
Okuno, Tatsuya
Minami, Shintaro
Chikenji, George
Prathipati, Philip
Nagao, Chioko
Mohsen, Attayeb
Ito, Mari
Mizuguchi, Kenji
Honma, Teruki
Ishida, Takashi
Hirokawa, Takatsugu
Akiyama, Yutaka
Sekijima, Masakazu
author_sort Chiba, Shuntaro
collection PubMed
description Potential inhibitors of a target biomolecule, NAD-dependent deacetylase Sirtuin 1, were identified by a contest-based approach, in which participants were asked to propose a prioritized list of 400 compounds from a designated compound library containing 2.5 million compounds using in silico methods and scoring. Our aim was to identify target enzyme inhibitors and to benchmark computer-aided drug discovery methods under the same experimental conditions. Collecting compound lists derived from various methods is advantageous for aggregating compounds with structurally diversified properties compared with the use of a single method. The inhibitory action on Sirtuin 1 of approximately half of the proposed compounds was experimentally accessed. Ultimately, seven structurally diverse compounds were identified.
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spelling pubmed-69251442019-12-23 A prospective compound screening contest identified broader inhibitors for Sirtuin 1 Chiba, Shuntaro Ohue, Masahito Gryniukova, Anastasiia Borysko, Petro Zozulya, Sergey Yasuo, Nobuaki Yoshino, Ryunosuke Ikeda, Kazuyoshi Shin, Woong-Hee Kihara, Daisuke Iwadate, Mitsuo Umeyama, Hideaki Ichikawa, Takaaki Teramoto, Reiji Hsin, Kun-Yi Gupta, Vipul Kitano, Hiroaki Sakamoto, Mika Higuchi, Akiko Miura, Nobuaki Yura, Kei Mochizuki, Masahiro Ramakrishnan, Chandrasekaran Thangakani, A. Mary Velmurugan, D. Gromiha, M. Michael Nakane, Itsuo Uchida, Nanako Hakariya, Hayase Tan, Modong Nakamura, Hironori K. Suzuki, Shogo D. Ito, Tomoki Kawatani, Masahiro Kudoh, Kentaroh Takashina, Sakurako Yamamoto, Kazuki Z. Moriwaki, Yoshitaka Oda, Keita Kobayashi, Daisuke Okuno, Tatsuya Minami, Shintaro Chikenji, George Prathipati, Philip Nagao, Chioko Mohsen, Attayeb Ito, Mari Mizuguchi, Kenji Honma, Teruki Ishida, Takashi Hirokawa, Takatsugu Akiyama, Yutaka Sekijima, Masakazu Sci Rep Article Potential inhibitors of a target biomolecule, NAD-dependent deacetylase Sirtuin 1, were identified by a contest-based approach, in which participants were asked to propose a prioritized list of 400 compounds from a designated compound library containing 2.5 million compounds using in silico methods and scoring. Our aim was to identify target enzyme inhibitors and to benchmark computer-aided drug discovery methods under the same experimental conditions. Collecting compound lists derived from various methods is advantageous for aggregating compounds with structurally diversified properties compared with the use of a single method. The inhibitory action on Sirtuin 1 of approximately half of the proposed compounds was experimentally accessed. Ultimately, seven structurally diverse compounds were identified. Nature Publishing Group UK 2019-12-20 /pmc/articles/PMC6925144/ /pubmed/31863054 http://dx.doi.org/10.1038/s41598-019-55069-y Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Chiba, Shuntaro
Ohue, Masahito
Gryniukova, Anastasiia
Borysko, Petro
Zozulya, Sergey
Yasuo, Nobuaki
Yoshino, Ryunosuke
Ikeda, Kazuyoshi
Shin, Woong-Hee
Kihara, Daisuke
Iwadate, Mitsuo
Umeyama, Hideaki
Ichikawa, Takaaki
Teramoto, Reiji
Hsin, Kun-Yi
Gupta, Vipul
Kitano, Hiroaki
Sakamoto, Mika
Higuchi, Akiko
Miura, Nobuaki
Yura, Kei
Mochizuki, Masahiro
Ramakrishnan, Chandrasekaran
Thangakani, A. Mary
Velmurugan, D.
Gromiha, M. Michael
Nakane, Itsuo
Uchida, Nanako
Hakariya, Hayase
Tan, Modong
Nakamura, Hironori K.
Suzuki, Shogo D.
Ito, Tomoki
Kawatani, Masahiro
Kudoh, Kentaroh
Takashina, Sakurako
Yamamoto, Kazuki Z.
Moriwaki, Yoshitaka
Oda, Keita
Kobayashi, Daisuke
Okuno, Tatsuya
Minami, Shintaro
Chikenji, George
Prathipati, Philip
Nagao, Chioko
Mohsen, Attayeb
Ito, Mari
Mizuguchi, Kenji
Honma, Teruki
Ishida, Takashi
Hirokawa, Takatsugu
Akiyama, Yutaka
Sekijima, Masakazu
A prospective compound screening contest identified broader inhibitors for Sirtuin 1
title A prospective compound screening contest identified broader inhibitors for Sirtuin 1
title_full A prospective compound screening contest identified broader inhibitors for Sirtuin 1
title_fullStr A prospective compound screening contest identified broader inhibitors for Sirtuin 1
title_full_unstemmed A prospective compound screening contest identified broader inhibitors for Sirtuin 1
title_short A prospective compound screening contest identified broader inhibitors for Sirtuin 1
title_sort prospective compound screening contest identified broader inhibitors for sirtuin 1
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6925144/
https://www.ncbi.nlm.nih.gov/pubmed/31863054
http://dx.doi.org/10.1038/s41598-019-55069-y
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