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A new DNA-based model for finite field arithmetic

A Galois field [Formula: see text] with [Formula: see text] a prime number and [Formula: see text] is a mathematical structure widely used in Cryptography and Error Correcting Codes Theory. In this paper, we propose a novel DNA-based model for arithmetic over [Formula: see text]. Our model has three...

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Detalles Bibliográficos
Autores principales: Jirón, Iván, Soto, Susana, Marín, Sabrina, Acosta, Mauricio, Soto, Ismael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6926258/
https://www.ncbi.nlm.nih.gov/pubmed/31890936
http://dx.doi.org/10.1016/j.heliyon.2019.e02901
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author Jirón, Iván
Soto, Susana
Marín, Sabrina
Acosta, Mauricio
Soto, Ismael
author_facet Jirón, Iván
Soto, Susana
Marín, Sabrina
Acosta, Mauricio
Soto, Ismael
author_sort Jirón, Iván
collection PubMed
description A Galois field [Formula: see text] with [Formula: see text] a prime number and [Formula: see text] is a mathematical structure widely used in Cryptography and Error Correcting Codes Theory. In this paper, we propose a novel DNA-based model for arithmetic over [Formula: see text]. Our model has three main advantages over other previously described models. First, it has a flexible implementation in the laboratory that allows the realization arithmetic calculations in parallel for [Formula: see text] , while the tile assembly and the sticker models are limited to [Formula: see text]. Second, the proposed model is less prone to error, because it is grounded on conventional Polymerase Chain Reaction (PCR) amplification and gel electrophoresis techniques. Hence, the problems associated to models such as tile-assembly and stickers, that arise when using more complex molecular techniques, such as hybridization and denaturation, are avoided. Third, it is simple to implement and requires 50 ng/μL per DNA double fragment used to develop the calculations, since the only feature of interest is the size of the DNA double strand fragments. The efficiency of our model has execution times of order [Formula: see text] and [Formula: see text] , for the addition and multiplication over [Formula: see text] , respectively. Furthermore, this paper provides one of the few experimental evidences of arithmetic calculations for molecular computing and validates the technical applicability of the proposed model to perform arithmetic operations over [Formula: see text].
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spelling pubmed-69262582019-12-30 A new DNA-based model for finite field arithmetic Jirón, Iván Soto, Susana Marín, Sabrina Acosta, Mauricio Soto, Ismael Heliyon Article A Galois field [Formula: see text] with [Formula: see text] a prime number and [Formula: see text] is a mathematical structure widely used in Cryptography and Error Correcting Codes Theory. In this paper, we propose a novel DNA-based model for arithmetic over [Formula: see text]. Our model has three main advantages over other previously described models. First, it has a flexible implementation in the laboratory that allows the realization arithmetic calculations in parallel for [Formula: see text] , while the tile assembly and the sticker models are limited to [Formula: see text]. Second, the proposed model is less prone to error, because it is grounded on conventional Polymerase Chain Reaction (PCR) amplification and gel electrophoresis techniques. Hence, the problems associated to models such as tile-assembly and stickers, that arise when using more complex molecular techniques, such as hybridization and denaturation, are avoided. Third, it is simple to implement and requires 50 ng/μL per DNA double fragment used to develop the calculations, since the only feature of interest is the size of the DNA double strand fragments. The efficiency of our model has execution times of order [Formula: see text] and [Formula: see text] , for the addition and multiplication over [Formula: see text] , respectively. Furthermore, this paper provides one of the few experimental evidences of arithmetic calculations for molecular computing and validates the technical applicability of the proposed model to perform arithmetic operations over [Formula: see text]. Elsevier 2019-12-11 /pmc/articles/PMC6926258/ /pubmed/31890936 http://dx.doi.org/10.1016/j.heliyon.2019.e02901 Text en © 2019 Published by Elsevier Ltd. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Jirón, Iván
Soto, Susana
Marín, Sabrina
Acosta, Mauricio
Soto, Ismael
A new DNA-based model for finite field arithmetic
title A new DNA-based model for finite field arithmetic
title_full A new DNA-based model for finite field arithmetic
title_fullStr A new DNA-based model for finite field arithmetic
title_full_unstemmed A new DNA-based model for finite field arithmetic
title_short A new DNA-based model for finite field arithmetic
title_sort new dna-based model for finite field arithmetic
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6926258/
https://www.ncbi.nlm.nih.gov/pubmed/31890936
http://dx.doi.org/10.1016/j.heliyon.2019.e02901
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