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Mapping Environmental Suitability of Scrub Typhus in Nepal Using MaxEnt and Random Forest Models

Being a globally emerging mite-borne zoonotic disease, scrub typhus is a serious public health concern in Nepal. Mapping environmental suitability and quantifying the human population under risk of the disease is important for prevention and control efforts. In this study, we model and map the envir...

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Autores principales: Acharya, Bipin Kumar, Chen, Wei, Ruan, Zengliang, Pant, Gobind Prasad, Yang, Yin, Shah, Lalan Prasad, Cao, Chunxiang, Xu, Zhiwei, Dhimal, Meghnath, Lin, Hualiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6926588/
https://www.ncbi.nlm.nih.gov/pubmed/31810239
http://dx.doi.org/10.3390/ijerph16234845
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author Acharya, Bipin Kumar
Chen, Wei
Ruan, Zengliang
Pant, Gobind Prasad
Yang, Yin
Shah, Lalan Prasad
Cao, Chunxiang
Xu, Zhiwei
Dhimal, Meghnath
Lin, Hualiang
author_facet Acharya, Bipin Kumar
Chen, Wei
Ruan, Zengliang
Pant, Gobind Prasad
Yang, Yin
Shah, Lalan Prasad
Cao, Chunxiang
Xu, Zhiwei
Dhimal, Meghnath
Lin, Hualiang
author_sort Acharya, Bipin Kumar
collection PubMed
description Being a globally emerging mite-borne zoonotic disease, scrub typhus is a serious public health concern in Nepal. Mapping environmental suitability and quantifying the human population under risk of the disease is important for prevention and control efforts. In this study, we model and map the environmental suitability of scrub typhus using the ecological niche approach, machine learning modeling techniques, and report locations of scrub typhus along with several climatic, topographic, Normalized Difference Vegetation Index (NDVI), and proximity explanatory variables and estimated population under the risk of disease at a national level. Both MaxEnt and RF technique results reveal robust predictive power with test The area under curve (AUC) and true skill statistics (TSS) of above 0.8 and 0.6, respectively. Spatial prediction reveals that environmentally suitable areas of scrub typhus are widely distributed across the country particularly in the low-land Tarai and less elevated river valleys. We found that areas close to agricultural land with gentle slopes have higher suitability of scrub typhus occurrence. Despite several speculations on the association between scrub typhus and proximity to earthquake epicenters, we did not find a significant role of proximity to earthquake epicenters in the distribution of scrub typhus in Nepal. About 43% of the population living in highly suitable areas for scrub typhus are at higher risk of infection, followed by 29% living in suitable areas of moderate-risk, and about 22% living in moderately suitable areas of lower risk. These findings could be useful in selecting priority areas for surveillance and control strategies effectively.
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spelling pubmed-69265882019-12-24 Mapping Environmental Suitability of Scrub Typhus in Nepal Using MaxEnt and Random Forest Models Acharya, Bipin Kumar Chen, Wei Ruan, Zengliang Pant, Gobind Prasad Yang, Yin Shah, Lalan Prasad Cao, Chunxiang Xu, Zhiwei Dhimal, Meghnath Lin, Hualiang Int J Environ Res Public Health Article Being a globally emerging mite-borne zoonotic disease, scrub typhus is a serious public health concern in Nepal. Mapping environmental suitability and quantifying the human population under risk of the disease is important for prevention and control efforts. In this study, we model and map the environmental suitability of scrub typhus using the ecological niche approach, machine learning modeling techniques, and report locations of scrub typhus along with several climatic, topographic, Normalized Difference Vegetation Index (NDVI), and proximity explanatory variables and estimated population under the risk of disease at a national level. Both MaxEnt and RF technique results reveal robust predictive power with test The area under curve (AUC) and true skill statistics (TSS) of above 0.8 and 0.6, respectively. Spatial prediction reveals that environmentally suitable areas of scrub typhus are widely distributed across the country particularly in the low-land Tarai and less elevated river valleys. We found that areas close to agricultural land with gentle slopes have higher suitability of scrub typhus occurrence. Despite several speculations on the association between scrub typhus and proximity to earthquake epicenters, we did not find a significant role of proximity to earthquake epicenters in the distribution of scrub typhus in Nepal. About 43% of the population living in highly suitable areas for scrub typhus are at higher risk of infection, followed by 29% living in suitable areas of moderate-risk, and about 22% living in moderately suitable areas of lower risk. These findings could be useful in selecting priority areas for surveillance and control strategies effectively. MDPI 2019-12-02 2019-12 /pmc/articles/PMC6926588/ /pubmed/31810239 http://dx.doi.org/10.3390/ijerph16234845 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Acharya, Bipin Kumar
Chen, Wei
Ruan, Zengliang
Pant, Gobind Prasad
Yang, Yin
Shah, Lalan Prasad
Cao, Chunxiang
Xu, Zhiwei
Dhimal, Meghnath
Lin, Hualiang
Mapping Environmental Suitability of Scrub Typhus in Nepal Using MaxEnt and Random Forest Models
title Mapping Environmental Suitability of Scrub Typhus in Nepal Using MaxEnt and Random Forest Models
title_full Mapping Environmental Suitability of Scrub Typhus in Nepal Using MaxEnt and Random Forest Models
title_fullStr Mapping Environmental Suitability of Scrub Typhus in Nepal Using MaxEnt and Random Forest Models
title_full_unstemmed Mapping Environmental Suitability of Scrub Typhus in Nepal Using MaxEnt and Random Forest Models
title_short Mapping Environmental Suitability of Scrub Typhus in Nepal Using MaxEnt and Random Forest Models
title_sort mapping environmental suitability of scrub typhus in nepal using maxent and random forest models
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6926588/
https://www.ncbi.nlm.nih.gov/pubmed/31810239
http://dx.doi.org/10.3390/ijerph16234845
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