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TCGA-TCIA Impact on Radiogenomics Cancer Research: A Systematic Review

In the last decade, the development of radiogenomics research has produced a significant amount of papers describing relations between imaging features and several molecular ‘omic signatures arising from next-generation sequencing technology and their potential role in the integrated diagnostic fiel...

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Autores principales: Zanfardino, Mario, Pane, Katia, Mirabelli, Peppino, Salvatore, Marco, Franzese, Monica
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929079/
https://www.ncbi.nlm.nih.gov/pubmed/31795520
http://dx.doi.org/10.3390/ijms20236033
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author Zanfardino, Mario
Pane, Katia
Mirabelli, Peppino
Salvatore, Marco
Franzese, Monica
author_facet Zanfardino, Mario
Pane, Katia
Mirabelli, Peppino
Salvatore, Marco
Franzese, Monica
author_sort Zanfardino, Mario
collection PubMed
description In the last decade, the development of radiogenomics research has produced a significant amount of papers describing relations between imaging features and several molecular ‘omic signatures arising from next-generation sequencing technology and their potential role in the integrated diagnostic field. The most vulnerable point of many of these studies lies in the poor number of involved patients. In this scenario, a leading role is played by The Cancer Genome Atlas (TCGA) and The Cancer Imaging Archive (TCIA), which make available, respectively, molecular ‘omic data and linked imaging data. In this review, we systematically collected and analyzed radiogenomic studies based on TCGA-TCIA data. We organized literature per tumor type and molecular ‘omic data in order to discuss salient imaging genomic associations and limitations of each study. Finally, we outlined the potential clinical impact of radiogenomics to improve the accuracy of diagnosis and the prediction of patient outcomes in oncology.
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spelling pubmed-69290792019-12-26 TCGA-TCIA Impact on Radiogenomics Cancer Research: A Systematic Review Zanfardino, Mario Pane, Katia Mirabelli, Peppino Salvatore, Marco Franzese, Monica Int J Mol Sci Review In the last decade, the development of radiogenomics research has produced a significant amount of papers describing relations between imaging features and several molecular ‘omic signatures arising from next-generation sequencing technology and their potential role in the integrated diagnostic field. The most vulnerable point of many of these studies lies in the poor number of involved patients. In this scenario, a leading role is played by The Cancer Genome Atlas (TCGA) and The Cancer Imaging Archive (TCIA), which make available, respectively, molecular ‘omic data and linked imaging data. In this review, we systematically collected and analyzed radiogenomic studies based on TCGA-TCIA data. We organized literature per tumor type and molecular ‘omic data in order to discuss salient imaging genomic associations and limitations of each study. Finally, we outlined the potential clinical impact of radiogenomics to improve the accuracy of diagnosis and the prediction of patient outcomes in oncology. MDPI 2019-11-29 /pmc/articles/PMC6929079/ /pubmed/31795520 http://dx.doi.org/10.3390/ijms20236033 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Zanfardino, Mario
Pane, Katia
Mirabelli, Peppino
Salvatore, Marco
Franzese, Monica
TCGA-TCIA Impact on Radiogenomics Cancer Research: A Systematic Review
title TCGA-TCIA Impact on Radiogenomics Cancer Research: A Systematic Review
title_full TCGA-TCIA Impact on Radiogenomics Cancer Research: A Systematic Review
title_fullStr TCGA-TCIA Impact on Radiogenomics Cancer Research: A Systematic Review
title_full_unstemmed TCGA-TCIA Impact on Radiogenomics Cancer Research: A Systematic Review
title_short TCGA-TCIA Impact on Radiogenomics Cancer Research: A Systematic Review
title_sort tcga-tcia impact on radiogenomics cancer research: a systematic review
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929079/
https://www.ncbi.nlm.nih.gov/pubmed/31795520
http://dx.doi.org/10.3390/ijms20236033
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