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Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis
Tea (Camellia sinensis) is enriched with bioactive secondary metabolites, and is one of the most popular nonalcoholic beverages globally. Two tea reference genomes have been reported; however, the functional analysis of tea genes has lagged, mainly due to tea’s recalcitrance to genetic transformatio...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929147/ https://www.ncbi.nlm.nih.gov/pubmed/31775391 http://dx.doi.org/10.3390/ijms20235929 |
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author | Lin, Lin Cai, Weiwei Du, Zhenghua Zhang, Wenjing Xu, Quanming Sun, Weijiang Chen, Mingjie |
author_facet | Lin, Lin Cai, Weiwei Du, Zhenghua Zhang, Wenjing Xu, Quanming Sun, Weijiang Chen, Mingjie |
author_sort | Lin, Lin |
collection | PubMed |
description | Tea (Camellia sinensis) is enriched with bioactive secondary metabolites, and is one of the most popular nonalcoholic beverages globally. Two tea reference genomes have been reported; however, the functional analysis of tea genes has lagged, mainly due to tea’s recalcitrance to genetic transformation and the absence of alternative high throughput heterologous expression systems. A full-length cDNA collection with a streamlined cloning system is needed in this economically important woody crop species. RNAs were isolated from nine different vegetative tea tissues, pooled, then used to construct a normalized full-length cDNA library. The titer of unamplified and amplified cDNA library was 6.89 × 10(6) and 1.8 × 10(10) cfu/mL, respectively; the library recombinant rate was 87.2%. Preliminary characterization demonstrated that this collection can complement existing tea reference genomes and facilitate rare gene discovery. In addition, to streamline tea cDNA cloning and functional analysis, a binary vector (pBIG2113SF) was reengineered, seven tea cDNAs isolated from this library were successfully cloned into this vector, then transformed into Arabidopsis. One FL-cDNA, which encodes a putative P(1B)-type ATPase 5 (CsHMA5), was characterized further as a proof of concept. We demonstrated that overexpression of CsHMA5 in Arabidopsis resulted in copper hyposensitivity. Thus, our data demonstrated that this represents an efficient system for rare gene discovery and functional characterization of tea genes. The integration of a tea FL-cDNA collection with efficient cloning and a heterologous expression system would facilitate functional annotation and characterization of tea genes. |
format | Online Article Text |
id | pubmed-6929147 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-69291472019-12-26 Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis Lin, Lin Cai, Weiwei Du, Zhenghua Zhang, Wenjing Xu, Quanming Sun, Weijiang Chen, Mingjie Int J Mol Sci Article Tea (Camellia sinensis) is enriched with bioactive secondary metabolites, and is one of the most popular nonalcoholic beverages globally. Two tea reference genomes have been reported; however, the functional analysis of tea genes has lagged, mainly due to tea’s recalcitrance to genetic transformation and the absence of alternative high throughput heterologous expression systems. A full-length cDNA collection with a streamlined cloning system is needed in this economically important woody crop species. RNAs were isolated from nine different vegetative tea tissues, pooled, then used to construct a normalized full-length cDNA library. The titer of unamplified and amplified cDNA library was 6.89 × 10(6) and 1.8 × 10(10) cfu/mL, respectively; the library recombinant rate was 87.2%. Preliminary characterization demonstrated that this collection can complement existing tea reference genomes and facilitate rare gene discovery. In addition, to streamline tea cDNA cloning and functional analysis, a binary vector (pBIG2113SF) was reengineered, seven tea cDNAs isolated from this library were successfully cloned into this vector, then transformed into Arabidopsis. One FL-cDNA, which encodes a putative P(1B)-type ATPase 5 (CsHMA5), was characterized further as a proof of concept. We demonstrated that overexpression of CsHMA5 in Arabidopsis resulted in copper hyposensitivity. Thus, our data demonstrated that this represents an efficient system for rare gene discovery and functional characterization of tea genes. The integration of a tea FL-cDNA collection with efficient cloning and a heterologous expression system would facilitate functional annotation and characterization of tea genes. MDPI 2019-11-25 /pmc/articles/PMC6929147/ /pubmed/31775391 http://dx.doi.org/10.3390/ijms20235929 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Lin, Lin Cai, Weiwei Du, Zhenghua Zhang, Wenjing Xu, Quanming Sun, Weijiang Chen, Mingjie Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis |
title | Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis |
title_full | Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis |
title_fullStr | Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis |
title_full_unstemmed | Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis |
title_short | Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis |
title_sort | establishing a system for functional characterization of full-length cdnas of camellia sinensis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929147/ https://www.ncbi.nlm.nih.gov/pubmed/31775391 http://dx.doi.org/10.3390/ijms20235929 |
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