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Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis

Tea (Camellia sinensis) is enriched with bioactive secondary metabolites, and is one of the most popular nonalcoholic beverages globally. Two tea reference genomes have been reported; however, the functional analysis of tea genes has lagged, mainly due to tea’s recalcitrance to genetic transformatio...

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Autores principales: Lin, Lin, Cai, Weiwei, Du, Zhenghua, Zhang, Wenjing, Xu, Quanming, Sun, Weijiang, Chen, Mingjie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929147/
https://www.ncbi.nlm.nih.gov/pubmed/31775391
http://dx.doi.org/10.3390/ijms20235929
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author Lin, Lin
Cai, Weiwei
Du, Zhenghua
Zhang, Wenjing
Xu, Quanming
Sun, Weijiang
Chen, Mingjie
author_facet Lin, Lin
Cai, Weiwei
Du, Zhenghua
Zhang, Wenjing
Xu, Quanming
Sun, Weijiang
Chen, Mingjie
author_sort Lin, Lin
collection PubMed
description Tea (Camellia sinensis) is enriched with bioactive secondary metabolites, and is one of the most popular nonalcoholic beverages globally. Two tea reference genomes have been reported; however, the functional analysis of tea genes has lagged, mainly due to tea’s recalcitrance to genetic transformation and the absence of alternative high throughput heterologous expression systems. A full-length cDNA collection with a streamlined cloning system is needed in this economically important woody crop species. RNAs were isolated from nine different vegetative tea tissues, pooled, then used to construct a normalized full-length cDNA library. The titer of unamplified and amplified cDNA library was 6.89 × 10(6) and 1.8 × 10(10) cfu/mL, respectively; the library recombinant rate was 87.2%. Preliminary characterization demonstrated that this collection can complement existing tea reference genomes and facilitate rare gene discovery. In addition, to streamline tea cDNA cloning and functional analysis, a binary vector (pBIG2113SF) was reengineered, seven tea cDNAs isolated from this library were successfully cloned into this vector, then transformed into Arabidopsis. One FL-cDNA, which encodes a putative P(1B)-type ATPase 5 (CsHMA5), was characterized further as a proof of concept. We demonstrated that overexpression of CsHMA5 in Arabidopsis resulted in copper hyposensitivity. Thus, our data demonstrated that this represents an efficient system for rare gene discovery and functional characterization of tea genes. The integration of a tea FL-cDNA collection with efficient cloning and a heterologous expression system would facilitate functional annotation and characterization of tea genes.
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spelling pubmed-69291472019-12-26 Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis Lin, Lin Cai, Weiwei Du, Zhenghua Zhang, Wenjing Xu, Quanming Sun, Weijiang Chen, Mingjie Int J Mol Sci Article Tea (Camellia sinensis) is enriched with bioactive secondary metabolites, and is one of the most popular nonalcoholic beverages globally. Two tea reference genomes have been reported; however, the functional analysis of tea genes has lagged, mainly due to tea’s recalcitrance to genetic transformation and the absence of alternative high throughput heterologous expression systems. A full-length cDNA collection with a streamlined cloning system is needed in this economically important woody crop species. RNAs were isolated from nine different vegetative tea tissues, pooled, then used to construct a normalized full-length cDNA library. The titer of unamplified and amplified cDNA library was 6.89 × 10(6) and 1.8 × 10(10) cfu/mL, respectively; the library recombinant rate was 87.2%. Preliminary characterization demonstrated that this collection can complement existing tea reference genomes and facilitate rare gene discovery. In addition, to streamline tea cDNA cloning and functional analysis, a binary vector (pBIG2113SF) was reengineered, seven tea cDNAs isolated from this library were successfully cloned into this vector, then transformed into Arabidopsis. One FL-cDNA, which encodes a putative P(1B)-type ATPase 5 (CsHMA5), was characterized further as a proof of concept. We demonstrated that overexpression of CsHMA5 in Arabidopsis resulted in copper hyposensitivity. Thus, our data demonstrated that this represents an efficient system for rare gene discovery and functional characterization of tea genes. The integration of a tea FL-cDNA collection with efficient cloning and a heterologous expression system would facilitate functional annotation and characterization of tea genes. MDPI 2019-11-25 /pmc/articles/PMC6929147/ /pubmed/31775391 http://dx.doi.org/10.3390/ijms20235929 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lin, Lin
Cai, Weiwei
Du, Zhenghua
Zhang, Wenjing
Xu, Quanming
Sun, Weijiang
Chen, Mingjie
Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis
title Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis
title_full Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis
title_fullStr Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis
title_full_unstemmed Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis
title_short Establishing a System for Functional Characterization of Full-Length cDNAs of Camellia sinensis
title_sort establishing a system for functional characterization of full-length cdnas of camellia sinensis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929147/
https://www.ncbi.nlm.nih.gov/pubmed/31775391
http://dx.doi.org/10.3390/ijms20235929
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