Cargando…

scDC: single cell differential composition analysis

BACKGROUND: Differences in cell-type composition across subjects and conditions often carry biological significance. Recent advancements in single cell sequencing technologies enable cell-types to be identified at the single cell level, and as a result, cell-type composition of tissues can now be st...

Descripción completa

Detalles Bibliográficos
Autores principales:	Cao, Yue, Lin, Yingxin, Ormerod, John T., Yang, Pengyi, Yang, Jean Y.H., Lo, Kitty K.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2019
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929335/ https://www.ncbi.nlm.nih.gov/pubmed/31870280 http://dx.doi.org/10.1186/s12859-019-3211-9

Ejemplares similares

scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction
por: Cao, Yue, et al.
Publicado: (2022)

scREMOTE: Using multimodal single cell data to predict regulatory gene relationships and to build a computational cell reprogramming model
por: Tran, Andy, et al.
Publicado: (2022)

SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references
por: Dong, Meichen, et al.
Publicado: (2020)

scClassify: sample size estimation and multiscale classification of cells using single and multiple reference
por: Lin, Yingxin, et al.
Publicado: (2020)

scReClassify: post hoc cell type classification of single-cell rNA-seq data
por: Kim, Taiyun, et al.
Publicado: (2019)

Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2
por: Lin, Yingxin, et al.
Publicado: (2023)

Computational approaches for direct cell reprogramming: from the bulk omics era to the single cell era
por: Tran, Andy, et al.
Publicado: (2022)

scTIE: data integration and inference of gene regulation using single-cell temporal multimodal data
por: Lin, Yingxin, et al.
Publicado: (2023)

Differential distribution improves gene selection stability and has competitive classification performance for patient survival
por: Strbenac, Dario, et al.
Publicado: (2016)

Investigating higher order interactions in single cell data with scHOT
por: Ghazanfar, Shila, et al.
Publicado: (2020)

Investigation of systematic errors for analysis with DC and ScFi
por: Yazkov, V
Publicado: (2008)

Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data
por: Yu, Lijia, et al.
Publicado: (2022)

Evaluating stably expressed genes in single cells
por: Lin, Yingxin, et al.
Publicado: (2019)

Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data
por: Kim, Daniel, et al.
Publicado: (2023)

A benchmark study of simulation methods for single-cell RNA sequencing data
por: Cao, Yue, et al.
Publicado: (2021)

Benchmarking of analytical combinations for COVID-19 outcome prediction using single-cell RNA sequencing data
por: Cao, Yue, et al.
Publicado: (2023)

Expression, production, and renaturation of a functional single-chain variable antibody fragment (scFv) against human ICAM-1
por: Sun, H., et al.
Publicado: (2014)

Construction of a Human Cell Landscape of COVID-19 Infection at Single-cell Level
por: He, Jian, et al.
Publicado: (2021)

Calibration of data collected in 2008 and the first part of 2009 with VH, HH, DC and ScFi
por: Vrba, T, et al.
Publicado: (2009)

Integrated single cell data analysis reveals cell specific networks and novel coactivation markers
por: Ghazanfar, Shila, et al.
Publicado: (2016)

Human IP10-scFv and DC-induced CTL synergistically inhibit the growth of glioma in a xenograft model
por: Wang, Xuan, et al.
Publicado: (2014)

Single Event Burnout in DC-DC Converters for the LHC Experiments
por: Rivetta, C
Publicado: (2001)

scCODA is a Bayesian model for compositional single-cell data analysis
por: Büttner, M., et al.
Publicado: (2021)

Essential DC/DC Converters
por: Luo, Fang Lin
Publicado: (2005)

Advanced DC/DC converters
por: Luo, Fang Lin, et al.
Publicado: (2017)

Advanced DC/DC converters
por: Luo, Fang Lin, et al.
Publicado: (2016)

A multi-step classifier addressing cohort heterogeneity improves performance of prognostic biomarkers in three cancer types
por: Patrick, Ellis, et al.
Publicado: (2016)

Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes
por: Sokolowski, Dustin J, et al.
Publicado: (2021)

Extracellular vesicles from mature dendritic cells (DC) differentiate monocytes into immature DC
por: Schierer, Stefan, et al.
Publicado: (2018)

Single-DC-source multilevel inverters
por: Vahedi, Hani, et al.
Publicado: (2019)

Pcdh19 mediates olfactory sensory neuron coalescence during postnatal stages and regeneration
por: Martinez, Andrew P., et al.
Publicado: (2023)

A Composite DC–DC Converter Based on the Versatile Buck–Boost Topology for Electric Vehicle Applications
por: González-Castaño, Catalina, et al.
Publicado: (2022)

Assessing the Role of STAT3 in DC Differentiation and Autologous DC Immunotherapy in Mouse Models of GBM
por: Assi, Hikmat, et al.
Publicado: (2014)

scMEB: a fast and clustering-independent method for detecting differentially expressed genes in single-cell RNA-seq data
por: Zhu, Jiadi, et al.
Publicado: (2023)

Ensemble deep learning of embeddings for clustering multimodal single-cell omics data
por: Yu, Lijia, et al.
Publicado: (2023)

Preparation and physical characterization of calcium sulfate cement/silica-based mesoporous material composites for controlled release of BMP-2
por: Tan, Honglue, et al.
Publicado: (2015)

THERMAL ELECTRICAL MODELS OF SC LINK
por: Y. Yang, et al.
Publicado: (2014)

scInTime: A Computational Method Leveraging Single-Cell Trajectory and Gene Regulatory Networks to Identify Master Regulators of Cellular Differentiation
por: Xu, Qian, et al.
Publicado: (2022)

Primary Human mDC1, mDC2, and pDC Dendritic Cells Are Differentially Infected and Activated by Respiratory Syncytial Virus
por: Johnson, Teresa R., et al.
Publicado: (2011)

scHiCDiff: detecting differential chromatin interactions in single-cell Hi-C data
por: Liu, Huiling, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_ba5m7secrp83f5pk9l7e5uaslf