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Occurrence prediction of pests and diseases in cotton on the basis of weather factors by long short term memory network

BACKGROUND: The occurrence of cotton pests and diseases has always been an important factor affecting the total cotton production. Cotton has a great dependence on environmental factors during its growth, especially climate change. In recent years, machine learning and especially deep learning metho...

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Autores principales: Xiao, Qingxin, Li, Weilu, Kai, Yuanzhong, Chen, Peng, Zhang, Jun, Wang, Bing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929544/
https://www.ncbi.nlm.nih.gov/pubmed/31874611
http://dx.doi.org/10.1186/s12859-019-3262-y
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author Xiao, Qingxin
Li, Weilu
Kai, Yuanzhong
Chen, Peng
Zhang, Jun
Wang, Bing
author_facet Xiao, Qingxin
Li, Weilu
Kai, Yuanzhong
Chen, Peng
Zhang, Jun
Wang, Bing
author_sort Xiao, Qingxin
collection PubMed
description BACKGROUND: The occurrence of cotton pests and diseases has always been an important factor affecting the total cotton production. Cotton has a great dependence on environmental factors during its growth, especially climate change. In recent years, machine learning and especially deep learning methods have been widely used in many fields and have achieved good results. METHODS: First, this papaer used the common Aprioro algorithm to find the association rules between weather factors and the occurrence of cotton pests. Then, in this paper, the problem of predicting the occurrence of pests and diseases is formulated as time series prediction, and an LSTM-based method was developed to solve the problem. RESULTS: The association analysis reveals that moderate temperature, humid air, low wind spreed and rain fall in autumn and winter are more likely to occur cotton pests and diseases. The discovery was then used to predict the occurrence of pests and diseases. Experimental results showed that LSTM performs well on the prediction of occurrence of pests and diseases in cotton fields, and yields the Area Under the Curve (AUC) of 0.97. CONCLUSION: Suitable temperature, humidity, low rainfall, low wind speed, suitable sunshine time and low evaporation are more likely to cause cotton pests and diseases. Based on these associations as well as historical weather and pest records, LSTM network is a good predictor for future pest and disease occurrences. Moreover, compared to the traditional machine learning models (i.e., SVM and Random Forest), the LSTM network performs the best.
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spelling pubmed-69295442019-12-30 Occurrence prediction of pests and diseases in cotton on the basis of weather factors by long short term memory network Xiao, Qingxin Li, Weilu Kai, Yuanzhong Chen, Peng Zhang, Jun Wang, Bing BMC Bioinformatics Research BACKGROUND: The occurrence of cotton pests and diseases has always been an important factor affecting the total cotton production. Cotton has a great dependence on environmental factors during its growth, especially climate change. In recent years, machine learning and especially deep learning methods have been widely used in many fields and have achieved good results. METHODS: First, this papaer used the common Aprioro algorithm to find the association rules between weather factors and the occurrence of cotton pests. Then, in this paper, the problem of predicting the occurrence of pests and diseases is formulated as time series prediction, and an LSTM-based method was developed to solve the problem. RESULTS: The association analysis reveals that moderate temperature, humid air, low wind spreed and rain fall in autumn and winter are more likely to occur cotton pests and diseases. The discovery was then used to predict the occurrence of pests and diseases. Experimental results showed that LSTM performs well on the prediction of occurrence of pests and diseases in cotton fields, and yields the Area Under the Curve (AUC) of 0.97. CONCLUSION: Suitable temperature, humidity, low rainfall, low wind speed, suitable sunshine time and low evaporation are more likely to cause cotton pests and diseases. Based on these associations as well as historical weather and pest records, LSTM network is a good predictor for future pest and disease occurrences. Moreover, compared to the traditional machine learning models (i.e., SVM and Random Forest), the LSTM network performs the best. BioMed Central 2019-12-24 /pmc/articles/PMC6929544/ /pubmed/31874611 http://dx.doi.org/10.1186/s12859-019-3262-y Text en © The Author(s) 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Xiao, Qingxin
Li, Weilu
Kai, Yuanzhong
Chen, Peng
Zhang, Jun
Wang, Bing
Occurrence prediction of pests and diseases in cotton on the basis of weather factors by long short term memory network
title Occurrence prediction of pests and diseases in cotton on the basis of weather factors by long short term memory network
title_full Occurrence prediction of pests and diseases in cotton on the basis of weather factors by long short term memory network
title_fullStr Occurrence prediction of pests and diseases in cotton on the basis of weather factors by long short term memory network
title_full_unstemmed Occurrence prediction of pests and diseases in cotton on the basis of weather factors by long short term memory network
title_short Occurrence prediction of pests and diseases in cotton on the basis of weather factors by long short term memory network
title_sort occurrence prediction of pests and diseases in cotton on the basis of weather factors by long short term memory network
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6929544/
https://www.ncbi.nlm.nih.gov/pubmed/31874611
http://dx.doi.org/10.1186/s12859-019-3262-y
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