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Quantitative Systems Pharmacology and Physiologically‐Based Pharmacokinetic Modeling With mrgsolve: A Hands‐On Tutorial

mrgsolve is an open‐source R package available on the Comprehensive R Archive Network. It combines R and C++ coding for simulation from hierarchical, ordinary differential equation–based models. Its efficient simulation engine and integration into a parallelizable, R‐based workflow makes mrgsolve a...

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Detalles Bibliográficos
Autores principales: Elmokadem, Ahmed, Riggs, Matthew M., Baron, Kyle T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6930861/
https://www.ncbi.nlm.nih.gov/pubmed/31652028
http://dx.doi.org/10.1002/psp4.12467
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author Elmokadem, Ahmed
Riggs, Matthew M.
Baron, Kyle T.
author_facet Elmokadem, Ahmed
Riggs, Matthew M.
Baron, Kyle T.
author_sort Elmokadem, Ahmed
collection PubMed
description mrgsolve is an open‐source R package available on the Comprehensive R Archive Network. It combines R and C++ coding for simulation from hierarchical, ordinary differential equation–based models. Its efficient simulation engine and integration into a parallelizable, R‐based workflow makes mrgsolve a convenient tool both for simple and complex models and thus is ideal for physiologically‐based pharmacokinetic (PBPK) and quantitative systems pharmacology (QSP) model. This tutorial will first introduce the basics of the mrgsolve simulation workflow, including model specification, the introduction of interventions (dosing events) into the simulation, and simulated results postprocessing. An applied simulation example is then presented using a PBPK model for voriconazole, including a model validation step against adult and pediatric data sets. A final simulation example is then presented using a previously published QSP model for mitogen‐activated protein kinase signaling in colorectal cancer, illustrating population simulation of different combination therapies.
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spelling pubmed-69308612019-12-27 Quantitative Systems Pharmacology and Physiologically‐Based Pharmacokinetic Modeling With mrgsolve: A Hands‐On Tutorial Elmokadem, Ahmed Riggs, Matthew M. Baron, Kyle T. CPT Pharmacometrics Syst Pharmacol Tutorial mrgsolve is an open‐source R package available on the Comprehensive R Archive Network. It combines R and C++ coding for simulation from hierarchical, ordinary differential equation–based models. Its efficient simulation engine and integration into a parallelizable, R‐based workflow makes mrgsolve a convenient tool both for simple and complex models and thus is ideal for physiologically‐based pharmacokinetic (PBPK) and quantitative systems pharmacology (QSP) model. This tutorial will first introduce the basics of the mrgsolve simulation workflow, including model specification, the introduction of interventions (dosing events) into the simulation, and simulated results postprocessing. An applied simulation example is then presented using a PBPK model for voriconazole, including a model validation step against adult and pediatric data sets. A final simulation example is then presented using a previously published QSP model for mitogen‐activated protein kinase signaling in colorectal cancer, illustrating population simulation of different combination therapies. John Wiley and Sons Inc. 2019-11-14 2019-12 /pmc/articles/PMC6930861/ /pubmed/31652028 http://dx.doi.org/10.1002/psp4.12467 Text en © 2019 Metrum Research Group. CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals, Inc. on behalf of the American Society for Clinical Pharmacology and Therapeutics. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Tutorial
Elmokadem, Ahmed
Riggs, Matthew M.
Baron, Kyle T.
Quantitative Systems Pharmacology and Physiologically‐Based Pharmacokinetic Modeling With mrgsolve: A Hands‐On Tutorial
title Quantitative Systems Pharmacology and Physiologically‐Based Pharmacokinetic Modeling With mrgsolve: A Hands‐On Tutorial
title_full Quantitative Systems Pharmacology and Physiologically‐Based Pharmacokinetic Modeling With mrgsolve: A Hands‐On Tutorial
title_fullStr Quantitative Systems Pharmacology and Physiologically‐Based Pharmacokinetic Modeling With mrgsolve: A Hands‐On Tutorial
title_full_unstemmed Quantitative Systems Pharmacology and Physiologically‐Based Pharmacokinetic Modeling With mrgsolve: A Hands‐On Tutorial
title_short Quantitative Systems Pharmacology and Physiologically‐Based Pharmacokinetic Modeling With mrgsolve: A Hands‐On Tutorial
title_sort quantitative systems pharmacology and physiologically‐based pharmacokinetic modeling with mrgsolve: a hands‐on tutorial
topic Tutorial
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6930861/
https://www.ncbi.nlm.nih.gov/pubmed/31652028
http://dx.doi.org/10.1002/psp4.12467
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