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Prognostic value of immune-related genes in clear cell renal cell carcinoma

Clear cell renal cell carcinoma (ccRCC) is the most common pathological subtype of renal cell carcinoma, and immune-related genes (IRGs) are key contributors to its development. In this study, the gene expression profiles and clinical data of ccRCC patients were downloaded from The Cancer Genome Atl...

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Autores principales: Wan, Bangbei, Liu, Bo, Huang, Yuan, Yu, Gang, Lv, Cai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6932908/
https://www.ncbi.nlm.nih.gov/pubmed/31821170
http://dx.doi.org/10.18632/aging.102548
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author Wan, Bangbei
Liu, Bo
Huang, Yuan
Yu, Gang
Lv, Cai
author_facet Wan, Bangbei
Liu, Bo
Huang, Yuan
Yu, Gang
Lv, Cai
author_sort Wan, Bangbei
collection PubMed
description Clear cell renal cell carcinoma (ccRCC) is the most common pathological subtype of renal cell carcinoma, and immune-related genes (IRGs) are key contributors to its development. In this study, the gene expression profiles and clinical data of ccRCC patients were downloaded from The Cancer Genome Atlas database and the cBioPortal database, respectively. IRGs were obtained from the ImmPort database. We analyzed the expression of IRGs in ccRCC, and discovered 681 that were differentially expressed between ccRCC and normal kidney tissues. Univariate Cox regression analysis was used to identify prognostic differentially expressed IRGs (PDEIRGs). Using Lasso regression and multivariate Cox regression analyses, we detected seven optimal PDEIRGs (PLAU, ISG15, IRF9, ARG2, RNASE2, SEMA3G and UCN) and used them to construct a risk model to predict the prognosis of ccRCC patients. This model accurately stratified patients with different survival outcomes and precisely identified patients with different mutation burdens. Our findings suggest the seven PDEIRGs identified in this study are valuable prognostic predictors in ccRCC patients. These genes could be used to investigate the developmental mechanisms of ccRCC and to design individualized treatments for ccRCC patients.
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spelling pubmed-69329082020-01-03 Prognostic value of immune-related genes in clear cell renal cell carcinoma Wan, Bangbei Liu, Bo Huang, Yuan Yu, Gang Lv, Cai Aging (Albany NY) Research Paper Clear cell renal cell carcinoma (ccRCC) is the most common pathological subtype of renal cell carcinoma, and immune-related genes (IRGs) are key contributors to its development. In this study, the gene expression profiles and clinical data of ccRCC patients were downloaded from The Cancer Genome Atlas database and the cBioPortal database, respectively. IRGs were obtained from the ImmPort database. We analyzed the expression of IRGs in ccRCC, and discovered 681 that were differentially expressed between ccRCC and normal kidney tissues. Univariate Cox regression analysis was used to identify prognostic differentially expressed IRGs (PDEIRGs). Using Lasso regression and multivariate Cox regression analyses, we detected seven optimal PDEIRGs (PLAU, ISG15, IRF9, ARG2, RNASE2, SEMA3G and UCN) and used them to construct a risk model to predict the prognosis of ccRCC patients. This model accurately stratified patients with different survival outcomes and precisely identified patients with different mutation burdens. Our findings suggest the seven PDEIRGs identified in this study are valuable prognostic predictors in ccRCC patients. These genes could be used to investigate the developmental mechanisms of ccRCC and to design individualized treatments for ccRCC patients. Impact Journals 2019-12-10 /pmc/articles/PMC6932908/ /pubmed/31821170 http://dx.doi.org/10.18632/aging.102548 Text en Copyright © 2019 Wan et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Wan, Bangbei
Liu, Bo
Huang, Yuan
Yu, Gang
Lv, Cai
Prognostic value of immune-related genes in clear cell renal cell carcinoma
title Prognostic value of immune-related genes in clear cell renal cell carcinoma
title_full Prognostic value of immune-related genes in clear cell renal cell carcinoma
title_fullStr Prognostic value of immune-related genes in clear cell renal cell carcinoma
title_full_unstemmed Prognostic value of immune-related genes in clear cell renal cell carcinoma
title_short Prognostic value of immune-related genes in clear cell renal cell carcinoma
title_sort prognostic value of immune-related genes in clear cell renal cell carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6932908/
https://www.ncbi.nlm.nih.gov/pubmed/31821170
http://dx.doi.org/10.18632/aging.102548
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