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Draft genome of Ompok bimaculatus (Pabda fish)

OBJECTIVE: Pabda (Ompok bimaculatus) is a freshwater catfish, largely available in Asian countries, especially in Bangladesh, India, Pakistan and Nepal. This fish is highly valued for its fabulous taste and high nutritional value and is very popular as a rich source of proteins, omega-3 and omega-6...

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Autores principales: Dhar, Ruby, Pethusamy, Karthikeyan, Singh, Sunil, Mukherjee, Indrani, Seethy, Ashikh, Sengupta, Bharoti, Srivastava, Tryambak, Sarkar, Sajib, Mandal, Vikramjit, Karmakar, Madhumita, Gupta, Sandipan, Ghosh, Arpita, Karmakar, Subhradip
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6933649/
https://www.ncbi.nlm.nih.gov/pubmed/31878964
http://dx.doi.org/10.1186/s13104-019-4867-y
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author Dhar, Ruby
Pethusamy, Karthikeyan
Singh, Sunil
Mukherjee, Indrani
Seethy, Ashikh
Sengupta, Bharoti
Srivastava, Tryambak
Sarkar, Sajib
Mandal, Vikramjit
Karmakar, Madhumita
Gupta, Sandipan
Ghosh, Arpita
Karmakar, Subhradip
author_facet Dhar, Ruby
Pethusamy, Karthikeyan
Singh, Sunil
Mukherjee, Indrani
Seethy, Ashikh
Sengupta, Bharoti
Srivastava, Tryambak
Sarkar, Sajib
Mandal, Vikramjit
Karmakar, Madhumita
Gupta, Sandipan
Ghosh, Arpita
Karmakar, Subhradip
author_sort Dhar, Ruby
collection PubMed
description OBJECTIVE: Pabda (Ompok bimaculatus) is a freshwater catfish, largely available in Asian countries, especially in Bangladesh, India, Pakistan and Nepal. This fish is highly valued for its fabulous taste and high nutritional value and is very popular as a rich source of proteins, omega-3 and omega-6 fatty acids, vitamins and mineral for growing children, pregnant females and elders. We performed de-novo sequencing of Ompok bimaculatus using a hybrid approach and present here a draft assembly for this species for the first time. DATA DESCRIPTION: The genome of Ompok bimaculatus (Fig. 1: Table 1, Data file 3) from Ganges river, has been sequenced by hybrid approach using Illumina short reads and PacBio long reads followed by structural annotations. The draft genome assembly was found to be 718 Mb with N50 size of 81 kb. MAKER gene annotation tool predicted 21,371 genes.
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spelling pubmed-69336492019-12-30 Draft genome of Ompok bimaculatus (Pabda fish) Dhar, Ruby Pethusamy, Karthikeyan Singh, Sunil Mukherjee, Indrani Seethy, Ashikh Sengupta, Bharoti Srivastava, Tryambak Sarkar, Sajib Mandal, Vikramjit Karmakar, Madhumita Gupta, Sandipan Ghosh, Arpita Karmakar, Subhradip BMC Res Notes Data Note OBJECTIVE: Pabda (Ompok bimaculatus) is a freshwater catfish, largely available in Asian countries, especially in Bangladesh, India, Pakistan and Nepal. This fish is highly valued for its fabulous taste and high nutritional value and is very popular as a rich source of proteins, omega-3 and omega-6 fatty acids, vitamins and mineral for growing children, pregnant females and elders. We performed de-novo sequencing of Ompok bimaculatus using a hybrid approach and present here a draft assembly for this species for the first time. DATA DESCRIPTION: The genome of Ompok bimaculatus (Fig. 1: Table 1, Data file 3) from Ganges river, has been sequenced by hybrid approach using Illumina short reads and PacBio long reads followed by structural annotations. The draft genome assembly was found to be 718 Mb with N50 size of 81 kb. MAKER gene annotation tool predicted 21,371 genes. BioMed Central 2019-12-26 /pmc/articles/PMC6933649/ /pubmed/31878964 http://dx.doi.org/10.1186/s13104-019-4867-y Text en © The Author(s) 2019 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Data Note
Dhar, Ruby
Pethusamy, Karthikeyan
Singh, Sunil
Mukherjee, Indrani
Seethy, Ashikh
Sengupta, Bharoti
Srivastava, Tryambak
Sarkar, Sajib
Mandal, Vikramjit
Karmakar, Madhumita
Gupta, Sandipan
Ghosh, Arpita
Karmakar, Subhradip
Draft genome of Ompok bimaculatus (Pabda fish)
title Draft genome of Ompok bimaculatus (Pabda fish)
title_full Draft genome of Ompok bimaculatus (Pabda fish)
title_fullStr Draft genome of Ompok bimaculatus (Pabda fish)
title_full_unstemmed Draft genome of Ompok bimaculatus (Pabda fish)
title_short Draft genome of Ompok bimaculatus (Pabda fish)
title_sort draft genome of ompok bimaculatus (pabda fish)
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6933649/
https://www.ncbi.nlm.nih.gov/pubmed/31878964
http://dx.doi.org/10.1186/s13104-019-4867-y
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