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Role of Acid in the Co-oligomerization of Formaldehyde and Pyrrole
[Image: see text] Building on previous work (J. Phys. Chem. A2017,121, 8154–8166) under neutral conditions, we examined the co-oligomerization of CH(2)O and pyrrole to form porphryinogen under acidic conditions using density functional theory (B3LYP//6-311G**). Thermodynamically, we found that azafu...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6933802/ https://www.ncbi.nlm.nih.gov/pubmed/31891109 http://dx.doi.org/10.1021/acsomega.9b03931 |
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author | Kua, Jeremy Miller, Alyssa S. Wallace, Camryn E. Loli, Helen |
author_facet | Kua, Jeremy Miller, Alyssa S. Wallace, Camryn E. Loli, Helen |
author_sort | Kua, Jeremy |
collection | PubMed |
description | [Image: see text] Building on previous work (J. Phys. Chem. A2017,121, 8154–8166) under neutral conditions, we examined the co-oligomerization of CH(2)O and pyrrole to form porphryinogen under acidic conditions using density functional theory (B3LYP//6-311G**). Thermodynamically, we found that azafulvene intermediates were significantly stabilized under highly acidic conditions. Kinetically, energy barriers were lowered for C–C bond formation, discriminating in favor of reactions that lead to porphyrinogen. However, it was challenging to satisfactorily combine our thermodynamic and kinetic profiles into a unified free-energy profile because of difficulties in optimizing transition states of cationic species involving proton hops. Instead, we used neutral carboxylic acids as a proxy to study how energy barriers changed. By combining data from both neutral and acidic conditions, we estimate a free-energy profile for the initial steps of oligomerization under milder acidic conditions more relevant to prebiotic chemistry. |
format | Online Article Text |
id | pubmed-6933802 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-69338022019-12-30 Role of Acid in the Co-oligomerization of Formaldehyde and Pyrrole Kua, Jeremy Miller, Alyssa S. Wallace, Camryn E. Loli, Helen ACS Omega [Image: see text] Building on previous work (J. Phys. Chem. A2017,121, 8154–8166) under neutral conditions, we examined the co-oligomerization of CH(2)O and pyrrole to form porphryinogen under acidic conditions using density functional theory (B3LYP//6-311G**). Thermodynamically, we found that azafulvene intermediates were significantly stabilized under highly acidic conditions. Kinetically, energy barriers were lowered for C–C bond formation, discriminating in favor of reactions that lead to porphyrinogen. However, it was challenging to satisfactorily combine our thermodynamic and kinetic profiles into a unified free-energy profile because of difficulties in optimizing transition states of cationic species involving proton hops. Instead, we used neutral carboxylic acids as a proxy to study how energy barriers changed. By combining data from both neutral and acidic conditions, we estimate a free-energy profile for the initial steps of oligomerization under milder acidic conditions more relevant to prebiotic chemistry. American Chemical Society 2019-12-09 /pmc/articles/PMC6933802/ /pubmed/31891109 http://dx.doi.org/10.1021/acsomega.9b03931 Text en Copyright © 2019 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Kua, Jeremy Miller, Alyssa S. Wallace, Camryn E. Loli, Helen Role of Acid in the Co-oligomerization of Formaldehyde and Pyrrole |
title | Role of Acid in
the Co-oligomerization of Formaldehyde
and Pyrrole |
title_full | Role of Acid in
the Co-oligomerization of Formaldehyde
and Pyrrole |
title_fullStr | Role of Acid in
the Co-oligomerization of Formaldehyde
and Pyrrole |
title_full_unstemmed | Role of Acid in
the Co-oligomerization of Formaldehyde
and Pyrrole |
title_short | Role of Acid in
the Co-oligomerization of Formaldehyde
and Pyrrole |
title_sort | role of acid in
the co-oligomerization of formaldehyde
and pyrrole |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6933802/ https://www.ncbi.nlm.nih.gov/pubmed/31891109 http://dx.doi.org/10.1021/acsomega.9b03931 |
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