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Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring

Major calcifications are of great concern when performing percutaneous coronary interventions because they inhibit proper stent deployment. We created a comprehensive software to segment calcifications in intravascular optical coherence tomography (IVOCT) images and to calculate their impact using t...

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Autores principales: Gharaibeh, Yazan, Prabhu, David, Kolluru, Chaitanya, Lee, Juhwan, Zimin, Vladislav, Bezerra, Hiram, Wilson, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6934132/
https://www.ncbi.nlm.nih.gov/pubmed/31903407
http://dx.doi.org/10.1117/1.JMI.6.4.045002
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author Gharaibeh, Yazan
Prabhu, David
Kolluru, Chaitanya
Lee, Juhwan
Zimin, Vladislav
Bezerra, Hiram
Wilson, David
author_facet Gharaibeh, Yazan
Prabhu, David
Kolluru, Chaitanya
Lee, Juhwan
Zimin, Vladislav
Bezerra, Hiram
Wilson, David
author_sort Gharaibeh, Yazan
collection PubMed
description Major calcifications are of great concern when performing percutaneous coronary interventions because they inhibit proper stent deployment. We created a comprehensive software to segment calcifications in intravascular optical coherence tomography (IVOCT) images and to calculate their impact using the stent-deployment calcification score, as reported by Fujino et al. We segmented the vascular lumen and calcifications using the pretrained SegNet, convolutional neural network, which was refined for our task. We cleaned segmentation results using conditional random field processing. We evaluated the method on manually annotated IVOCT volumes of interest (VOIs) without lesions and with calcifications, lipidous, or mixed lesions. The dataset included 48 VOIs taken from 34 clinical pullbacks, giving a total of 2640 in vivo images. Annotations were determined from consensus between two expert analysts. Keeping VOIs intact, we performed 10-fold cross-validation over all data. Following segmentation noise cleaning, we obtained sensitivities of [Formula: see text] , [Formula: see text] , and [Formula: see text] for calcified, lumen, and other tissue classes, respectively. From segmented regions, we automatically determined calcification depth, angle, and thickness attributes. Bland–Altman analysis suggested strong correlation between manually and automatically obtained lumen and calcification attributes. Agreement between manually and automatically obtained stent-deployment calcification scores was good (four of five lesions gave exact agreement). Results are encouraging and suggest our classification approach could be applied clinically for assessment and treatment planning of coronary calcification lesions.
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spelling pubmed-69341322020-12-27 Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring Gharaibeh, Yazan Prabhu, David Kolluru, Chaitanya Lee, Juhwan Zimin, Vladislav Bezerra, Hiram Wilson, David J Med Imaging (Bellingham) Image-Guided Procedures, Robotic Interventions, and Modeling Major calcifications are of great concern when performing percutaneous coronary interventions because they inhibit proper stent deployment. We created a comprehensive software to segment calcifications in intravascular optical coherence tomography (IVOCT) images and to calculate their impact using the stent-deployment calcification score, as reported by Fujino et al. We segmented the vascular lumen and calcifications using the pretrained SegNet, convolutional neural network, which was refined for our task. We cleaned segmentation results using conditional random field processing. We evaluated the method on manually annotated IVOCT volumes of interest (VOIs) without lesions and with calcifications, lipidous, or mixed lesions. The dataset included 48 VOIs taken from 34 clinical pullbacks, giving a total of 2640 in vivo images. Annotations were determined from consensus between two expert analysts. Keeping VOIs intact, we performed 10-fold cross-validation over all data. Following segmentation noise cleaning, we obtained sensitivities of [Formula: see text] , [Formula: see text] , and [Formula: see text] for calcified, lumen, and other tissue classes, respectively. From segmented regions, we automatically determined calcification depth, angle, and thickness attributes. Bland–Altman analysis suggested strong correlation between manually and automatically obtained lumen and calcification attributes. Agreement between manually and automatically obtained stent-deployment calcification scores was good (four of five lesions gave exact agreement). Results are encouraging and suggest our classification approach could be applied clinically for assessment and treatment planning of coronary calcification lesions. Society of Photo-Optical Instrumentation Engineers 2019-12-27 2019-10 /pmc/articles/PMC6934132/ /pubmed/31903407 http://dx.doi.org/10.1117/1.JMI.6.4.045002 Text en © The Authors. Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
spellingShingle Image-Guided Procedures, Robotic Interventions, and Modeling
Gharaibeh, Yazan
Prabhu, David
Kolluru, Chaitanya
Lee, Juhwan
Zimin, Vladislav
Bezerra, Hiram
Wilson, David
Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring
title Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring
title_full Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring
title_fullStr Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring
title_full_unstemmed Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring
title_short Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring
title_sort coronary calcification segmentation in intravascular oct images using deep learning: application to calcification scoring
topic Image-Guided Procedures, Robotic Interventions, and Modeling
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6934132/
https://www.ncbi.nlm.nih.gov/pubmed/31903407
http://dx.doi.org/10.1117/1.JMI.6.4.045002
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