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Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring
Major calcifications are of great concern when performing percutaneous coronary interventions because they inhibit proper stent deployment. We created a comprehensive software to segment calcifications in intravascular optical coherence tomography (IVOCT) images and to calculate their impact using t...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society of Photo-Optical Instrumentation Engineers
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6934132/ https://www.ncbi.nlm.nih.gov/pubmed/31903407 http://dx.doi.org/10.1117/1.JMI.6.4.045002 |
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author | Gharaibeh, Yazan Prabhu, David Kolluru, Chaitanya Lee, Juhwan Zimin, Vladislav Bezerra, Hiram Wilson, David |
author_facet | Gharaibeh, Yazan Prabhu, David Kolluru, Chaitanya Lee, Juhwan Zimin, Vladislav Bezerra, Hiram Wilson, David |
author_sort | Gharaibeh, Yazan |
collection | PubMed |
description | Major calcifications are of great concern when performing percutaneous coronary interventions because they inhibit proper stent deployment. We created a comprehensive software to segment calcifications in intravascular optical coherence tomography (IVOCT) images and to calculate their impact using the stent-deployment calcification score, as reported by Fujino et al. We segmented the vascular lumen and calcifications using the pretrained SegNet, convolutional neural network, which was refined for our task. We cleaned segmentation results using conditional random field processing. We evaluated the method on manually annotated IVOCT volumes of interest (VOIs) without lesions and with calcifications, lipidous, or mixed lesions. The dataset included 48 VOIs taken from 34 clinical pullbacks, giving a total of 2640 in vivo images. Annotations were determined from consensus between two expert analysts. Keeping VOIs intact, we performed 10-fold cross-validation over all data. Following segmentation noise cleaning, we obtained sensitivities of [Formula: see text] , [Formula: see text] , and [Formula: see text] for calcified, lumen, and other tissue classes, respectively. From segmented regions, we automatically determined calcification depth, angle, and thickness attributes. Bland–Altman analysis suggested strong correlation between manually and automatically obtained lumen and calcification attributes. Agreement between manually and automatically obtained stent-deployment calcification scores was good (four of five lesions gave exact agreement). Results are encouraging and suggest our classification approach could be applied clinically for assessment and treatment planning of coronary calcification lesions. |
format | Online Article Text |
id | pubmed-6934132 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Society of Photo-Optical Instrumentation Engineers |
record_format | MEDLINE/PubMed |
spelling | pubmed-69341322020-12-27 Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring Gharaibeh, Yazan Prabhu, David Kolluru, Chaitanya Lee, Juhwan Zimin, Vladislav Bezerra, Hiram Wilson, David J Med Imaging (Bellingham) Image-Guided Procedures, Robotic Interventions, and Modeling Major calcifications are of great concern when performing percutaneous coronary interventions because they inhibit proper stent deployment. We created a comprehensive software to segment calcifications in intravascular optical coherence tomography (IVOCT) images and to calculate their impact using the stent-deployment calcification score, as reported by Fujino et al. We segmented the vascular lumen and calcifications using the pretrained SegNet, convolutional neural network, which was refined for our task. We cleaned segmentation results using conditional random field processing. We evaluated the method on manually annotated IVOCT volumes of interest (VOIs) without lesions and with calcifications, lipidous, or mixed lesions. The dataset included 48 VOIs taken from 34 clinical pullbacks, giving a total of 2640 in vivo images. Annotations were determined from consensus between two expert analysts. Keeping VOIs intact, we performed 10-fold cross-validation over all data. Following segmentation noise cleaning, we obtained sensitivities of [Formula: see text] , [Formula: see text] , and [Formula: see text] for calcified, lumen, and other tissue classes, respectively. From segmented regions, we automatically determined calcification depth, angle, and thickness attributes. Bland–Altman analysis suggested strong correlation between manually and automatically obtained lumen and calcification attributes. Agreement between manually and automatically obtained stent-deployment calcification scores was good (four of five lesions gave exact agreement). Results are encouraging and suggest our classification approach could be applied clinically for assessment and treatment planning of coronary calcification lesions. Society of Photo-Optical Instrumentation Engineers 2019-12-27 2019-10 /pmc/articles/PMC6934132/ /pubmed/31903407 http://dx.doi.org/10.1117/1.JMI.6.4.045002 Text en © The Authors. Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI. |
spellingShingle | Image-Guided Procedures, Robotic Interventions, and Modeling Gharaibeh, Yazan Prabhu, David Kolluru, Chaitanya Lee, Juhwan Zimin, Vladislav Bezerra, Hiram Wilson, David Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring |
title | Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring |
title_full | Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring |
title_fullStr | Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring |
title_full_unstemmed | Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring |
title_short | Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring |
title_sort | coronary calcification segmentation in intravascular oct images using deep learning: application to calcification scoring |
topic | Image-Guided Procedures, Robotic Interventions, and Modeling |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6934132/ https://www.ncbi.nlm.nih.gov/pubmed/31903407 http://dx.doi.org/10.1117/1.JMI.6.4.045002 |
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