Cargando…

COUSIN (COdon Usage Similarity INdex): A Normalized Measure of Codon Usage Preferences

Codon Usage Preferences (CUPrefs) describe the unequal usage of synonymous codons at the gene, chromosome, or genome levels. Numerous indices have been developed to evaluate CUPrefs, either in absolute terms or with respect to a reference. We introduce the normalized index COUSIN (for COdon Usage Si...

Descripción completa

Detalles Bibliográficos
Autores principales:	Bourret, Jérôme, Alizon, Samuel, Bravo, Ignacio G
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2019
Materias:	Letter
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6934141/ https://www.ncbi.nlm.nih.gov/pubmed/31800035 http://dx.doi.org/10.1093/gbe/evz262

Ejemplares similares

Relative Codon Adaptation Index, a Sensitive Measure of Codon Usage Bias
por: Lee, Soohyun, et al.
Publicado: (2010)

SARS-CoV-2 Codon Usage Bias Downregulates Host Expressed Genes With Similar Codon Usage
por: Alonso, Andres Mariano, et al.
Publicado: (2020)

Modal Codon Usage: Assessing the Typical Codon Usage of a Genome
por: Davis, James J., et al.
Publicado: (2010)

Codon usage bias
por: Parvathy, Sujatha Thankeswaran, et al.
Publicado: (2021)

Inferring Adaptive Codon Preference to Understand Sources of Selection Shaping Codon Usage Bias
por: de Oliveira, Janaina Lima, et al.
Publicado: (2021)

Codon usage and codon context bias in Xanthophyllomyces dendrorhous
por: Baeza, Marcelo, et al.
Publicado: (2015)

Cancer, Warts, or Asymptomatic Infections: Clinical Presentation Matches Codon Usage Preferences in Human Papillomaviruses
por: Félez-Sánchez, Marta, et al.
Publicado: (2015)

Synonymous codon usage in Thermosynechococcus elongatus (cyanobacteria) identifies the factors shaping codon usage variation
por: Prabha, Ratna, et al.
Publicado: (2012)

Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus
por: Wong, Emily HM, et al.
Publicado: (2010)

The Dynamic Codon Biaser: calculating prokaryotic codon usage biases
por: Dehlinger, Brian, et al.
Publicado: (2021)

The Codon Statistics Database: A Database of Codon Usage Bias
por: Subramanian, Krishnamurthy, et al.
Publicado: (2022)

Codon usage bias and dinucleotide preference in 29 Drosophila species
por: Kokate, Prajakta P, et al.
Publicado: (2021)

CAIcal: A combined set of tools to assess codon usage adaptation
por: Puigbò, Pere, et al.
Publicado: (2008)

The characteristics of the synonymous codon usage in hepatitis B virus and the effects of host on the virus in codon usage pattern
por: Ma, Ming-ren, et al.
Publicado: (2011)

The characteristics of the synonymous codon usage in enterovirus 71 virus and the effects of host on the virus in codon usage pattern
por: Liu, Yong-sheng, et al.
Publicado: (2011)

A Major Controversy in Codon-Anticodon Adaptation Resolved by a New Codon Usage Index
por: Xia, Xuhua
Publicado: (2015)

Evolution of Codon Usage Bias in Diatoms
por: Krasovec, Marc, et al.
Publicado: (2019)

Codon usage similarity between viral and some host genes suggests a codon-specific translational regulation
por: Jitobaom, Kunlakanya, et al.
Publicado: (2020)

CodonO: codon usage bias analysis within and across genomes
por: Angellotti, Michael C., et al.
Publicado: (2007)

Analysis of computational codon usage models and their association with translationally slow codons
por: Wright, Gabriel, et al.
Publicado: (2020)

Genome Landscapes and Bacteriophage Codon Usage
por: Lucks, Julius B., et al.
Publicado: (2008)

Codon usage in twelve species of Drosophila
por: Vicario, Saverio, et al.
Publicado: (2007)

Universal function-specificity of codon usage
por: Najafabadi, Hamed Shateri, et al.
Publicado: (2009)

Correlation matrix for quartet codon usage
por: Frappat, L, et al.
Publicado: (2003)

Universality and Shannon entropy of codon usage
por: Frappat, L, et al.
Publicado: (2003)

Selective forces and mutational biases drive stop codon usage in the human genome: a comparison with sense codon usage
por: Trotta, Edoardo
Publicado: (2016)

Evidence that Natural Selection on Codon Usage in Drosophila pseudoobscura Varies Across Codons
por: Kliman, Richard M.
Publicado: (2014)

Modelling the Efficiency of Codon–tRNA Interactions Based on Codon Usage Bias
por: Sabi, Renana, et al.
Publicado: (2014)

SENCA: A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage
por: Pouyet, Fanny, et al.
Publicado: (2016)

Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage
por: Meyer, Douglas, et al.
Publicado: (2021)

Comprehensive codon usage analysis of porcine deltacoronavirus
por: He, Wei, et al.
Publicado: (2019)

Analysis of synonymous codon usage and evolution of begomoviruses
por: Xu, Xiao-zhong, et al.
Publicado: (2008)

Molecular evolution of synonymous codon usage in Populus
por: Ingvarsson, Pär K
Publicado: (2008)

Codon Usage Domains over Bacterial Chromosomes
por: Bailly-Bechet, Marc, et al.
Publicado: (2006)

Quantifying Position-Dependent Codon Usage Bias
por: Hockenberry, Adam J., et al.
Publicado: (2014)

Codon usage pattern in human SPANX genes
por: Choudhury, Monisha Nath, et al.
Publicado: (2015)

Recombination, meiotic expression and human codon usage
por: Pouyet, Fanny, et al.
Publicado: (2017)

Synonymous Codon Usages as an Evolutionary Dynamic for Chlamydiaceae
por: Li, Zhaocai, et al.
Publicado: (2018)

Ribo-seq enlightens codon usage bias
por: Paulet, Damien, et al.
Publicado: (2017)

Comprehensive Analysis of Codon Usage on Porcine Astrovirus
por: Wu, Huiguang, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_e011b94jif0t39vu82939h33v7