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MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment

Open Science has changed research by making data accessible and shareable, contributing to replicability to accelerate and disseminate knowledge. However, for rodent cognitive studies the availability of tools to share and disseminate data is scarce. Automated touchscreen-based tests enable systemat...

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Autores principales: Beraldo, Flavio H, Palmer, Daniel, Memar, Sara, Wasserman, David I, Lee, Wai-Jane V, Liang, Shuai, Creighton, Samantha D, Kolisnyk, Benjamin, Cowan, Matthew F, Mels, Justin, Masood, Talal S, Fodor, Chris, Al-Onaizi, Mohammed A, Bartha, Robert, Gee, Tom, Saksida, Lisa M, Bussey, Timothy J, Strother, Stephen S, Prado, Vania F, Winters, Boyer D, Prado, Marco AM
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6934379/
https://www.ncbi.nlm.nih.gov/pubmed/31825307
http://dx.doi.org/10.7554/eLife.49630
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author Beraldo, Flavio H
Palmer, Daniel
Memar, Sara
Wasserman, David I
Lee, Wai-Jane V
Liang, Shuai
Creighton, Samantha D
Kolisnyk, Benjamin
Cowan, Matthew F
Mels, Justin
Masood, Talal S
Fodor, Chris
Al-Onaizi, Mohammed A
Bartha, Robert
Gee, Tom
Saksida, Lisa M
Bussey, Timothy J
Strother, Stephen S
Prado, Vania F
Winters, Boyer D
Prado, Marco AM
author_facet Beraldo, Flavio H
Palmer, Daniel
Memar, Sara
Wasserman, David I
Lee, Wai-Jane V
Liang, Shuai
Creighton, Samantha D
Kolisnyk, Benjamin
Cowan, Matthew F
Mels, Justin
Masood, Talal S
Fodor, Chris
Al-Onaizi, Mohammed A
Bartha, Robert
Gee, Tom
Saksida, Lisa M
Bussey, Timothy J
Strother, Stephen S
Prado, Vania F
Winters, Boyer D
Prado, Marco AM
author_sort Beraldo, Flavio H
collection PubMed
description Open Science has changed research by making data accessible and shareable, contributing to replicability to accelerate and disseminate knowledge. However, for rodent cognitive studies the availability of tools to share and disseminate data is scarce. Automated touchscreen-based tests enable systematic cognitive assessment with easily standardised outputs that can facilitate data dissemination. Here we present an integration of touchscreen cognitive testing with an open-access database public repository (mousebytes.ca), as well as a Web platform for knowledge dissemination (https://touchscreencognition.org). We complement these resources with the largest dataset of age-dependent high-level cognitive assessment of mouse models of Alzheimer’s disease, expanding knowledge of affected cognitive domains from male and female mice of three strains. We envision that these new platforms will enhance sharing of protocols, data availability and transparency, allowing meta-analysis and reuse of mouse cognitive data to increase the replicability/reproducibility of datasets.
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spelling pubmed-69343792019-12-30 MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment Beraldo, Flavio H Palmer, Daniel Memar, Sara Wasserman, David I Lee, Wai-Jane V Liang, Shuai Creighton, Samantha D Kolisnyk, Benjamin Cowan, Matthew F Mels, Justin Masood, Talal S Fodor, Chris Al-Onaizi, Mohammed A Bartha, Robert Gee, Tom Saksida, Lisa M Bussey, Timothy J Strother, Stephen S Prado, Vania F Winters, Boyer D Prado, Marco AM eLife Neuroscience Open Science has changed research by making data accessible and shareable, contributing to replicability to accelerate and disseminate knowledge. However, for rodent cognitive studies the availability of tools to share and disseminate data is scarce. Automated touchscreen-based tests enable systematic cognitive assessment with easily standardised outputs that can facilitate data dissemination. Here we present an integration of touchscreen cognitive testing with an open-access database public repository (mousebytes.ca), as well as a Web platform for knowledge dissemination (https://touchscreencognition.org). We complement these resources with the largest dataset of age-dependent high-level cognitive assessment of mouse models of Alzheimer’s disease, expanding knowledge of affected cognitive domains from male and female mice of three strains. We envision that these new platforms will enhance sharing of protocols, data availability and transparency, allowing meta-analysis and reuse of mouse cognitive data to increase the replicability/reproducibility of datasets. eLife Sciences Publications, Ltd 2019-12-11 /pmc/articles/PMC6934379/ /pubmed/31825307 http://dx.doi.org/10.7554/eLife.49630 Text en © 2019, Beraldo et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Neuroscience
Beraldo, Flavio H
Palmer, Daniel
Memar, Sara
Wasserman, David I
Lee, Wai-Jane V
Liang, Shuai
Creighton, Samantha D
Kolisnyk, Benjamin
Cowan, Matthew F
Mels, Justin
Masood, Talal S
Fodor, Chris
Al-Onaizi, Mohammed A
Bartha, Robert
Gee, Tom
Saksida, Lisa M
Bussey, Timothy J
Strother, Stephen S
Prado, Vania F
Winters, Boyer D
Prado, Marco AM
MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment
title MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment
title_full MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment
title_fullStr MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment
title_full_unstemmed MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment
title_short MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment
title_sort mousebytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6934379/
https://www.ncbi.nlm.nih.gov/pubmed/31825307
http://dx.doi.org/10.7554/eLife.49630
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