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A generic workflow for Single Locus Sequence Typing (SLST) design and subspecies characterization of microbiota

We present TaxPhlAn, a new method and bioinformatics pipeline for design and analysis of single-locus sequence typing (SLST) markers to type and profile bacteria beyond the species-level in a complex microbial community background. TaxPhlAn can be applied to any group of phylogenetically-related bac...

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Detalles Bibliográficos
Autores principales:	Ederveen, Thomas H. A., Smits, Jos P. H., Hajo, Karima, van Schalkwijk, Saskia, Kouwenhoven, Tessa A., Lukovac, Sabina, Wels, Michiel, van den Bogaard, Ellen H., Schalkwijk, Joost, Boekhorst, Jos, Zeeuwen, Patrick L. J. M., van Hijum, Sacha A. F. T.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6934516/ https://www.ncbi.nlm.nih.gov/pubmed/31882601 http://dx.doi.org/10.1038/s41598-019-56065-y

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